Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1923 ATGGTGGAAGTGAAAGACAGAGGGGAAGGAAGGCTTCAGGAAGATATGGCGGTAAGTGGAAGAAGTTTGATGGAAGGAGTTCTCCCATTTCCGGCGATGATAGCGATGGAGTGTATCAACGTCGGTCTCAACACTCTTTTCAAAGCCGCCACCGCCGCCGGCATGAGCCACCACGTGTTCGTCGTCTATTCTTACTCTTTCGCCGCCCTTCTCCTCCTCCCTTCTCCCTTCATCTCTCGCAGATCCACTCGTCTTCCACCTCTCACTTTCTCTCTACTTTCGAAGATCGCTCTTCTCGGATTCATCGGTTCTTCTTCGCAGATTATGGGATACACGGGAATCAATTACAGCTCTCCAACGCTTGCTTCCGCCATCAGCAACCTTGTTCCTGCTTTCACTTTCATTCTTGCCATCATCTTCAGGATGGAGAAAGTGGTATTGAAAAGCAATAGCAGTCAAGCCAAAGTGATGGGCACAATAATATCAATAATAGGTGCATTTGTGGTCACATTTTACAAAGGTCCAAGGATCATGTTCTCTTCAGAGCCCATTTCTCTTTCACTTCATCACCATCCACAACTATCTTCTTCAGATTCTGATTGGATCATTGGCAGCCTTCTCTTGACTGCTGAATATATCTTGGTTCCACTTTGGTACATTGTTCAGACAAAAATAATGAAGGAATTCCCAGAAGAGGCAACAGTGATCTTCTTCTACAACTTAACTGTGGCCATCATAGCTGCAGTTGTAGGTGTGATTTTTGAGACAGATCCAAGTGCTTGGATTTTGAGGCAAAATACAGCATTGGCCTCTGTTTTATGCTCTGGACTATTTGGATCATGTTTAAATAATACAGTTCATACATGGGCACTCCGCTTGAAAGGGCCAGTGTTCGTAGCAATGTTTAAGCCGTTATCGATCGTTGTCGCTATCGTAATGGGAGTTCTGTTTCTTGGTGATTCTCTATATCTTGGAAGTCTCATTGGAGCATCCATAATATCCATAGGGTTTTACACTGTAATGTGGGGAAAATCAAAAGAAGAAATGGGTGTTGGAGAAGAAAAAGAAGAAGGCCATAGCTATAATCTTGATGGTAACAAGGAATCAAATGAAGATCAGAGAGTACCTCTTCTTGGAAGCTACAACACACAGAGATACAGTGCAGACCATCTATGGAAAGGATTGATTGGTACAACTTTTATTTGCCTTCAAGCTCTGGCTAATGGCTATGGCCAAGCATGGGAGGAAATTGTAAAATTTGTTTGTGGTCAGAGCATGTCTTAG 1284 43.46 MVEVKDRGEGRLQEDMAVSGRSLMEGVLPFPAMIAMECINVGLNTLFKAATAAGMSHHVFVVYSYSFAALLLLPSPFISRRSTRLPPLTFSLLSKIALLGFIGSSSQIMGYTGINYSSPTLASAISNLVPAFTFILAIIFRMEKVVLKSNSSQAKVMGTIISIIGAFVVTFYKGPRIMFSSEPISLSLHHHPQLSSSDSDWIIGSLLLTAEYILVPLWYIVQTKIMKEFPEEATVIFFYNLTVAIIAAVVGVIFETDPSAWILRQNTALASVLCSGLFGSCLNNTVHTWALRLKGPVFVAMFKPLSIVVAIVMGVLFLGDSLYLGSLIGASIISIGFYTVMWGKSKEEMGVGEEKEEGHSYNLDGNKESNEDQRVPLLGSYNTQRYSADHLWKGLIGTTFICLQALANGYGQAWEEIVKFVCGQSMS 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34115303 34120839 - ClG42_09g0192300.10 Clacu09g1923 258231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1923 427 MobiDBLite consensus disorder prediction 353 372 - -
Clacu09g1923 427 PANTHER WAT1-RELATED PROTEIN 32 357 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu09g1923 427 Pfam EamA-like transporter family 217 341 IPR000620 GO:0016020(InterPro)
Clacu09g1923 427 Pfam EamA-like transporter family 41 170 IPR000620 GO:0016020(InterPro)
Clacu09g1923 427 SUPERFAMILY Multidrug resistance efflux transporter EmrE 66 173 - -
Clacu09g1923 427 MobiDBLite consensus disorder prediction 353 371 - -
Clacu09g1923 427 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1923 Clacu-Chr9:34115303 Clacu10g1435 Clacu-Chr10:27498748 1.30E-77 dispersed
Clacu09g1923 Clacu-Chr9:34115303 Clacu09g1924 Clacu-Chr9:34129247 6.40E-69 tandem
Clacu05g2711 Clacu-Chr5:34646411 Clacu09g1923 Clacu-Chr9:34115303 2.50E-53 transposed
Clacu10g1434 Clacu-Chr10:27482274 Clacu09g1923 Clacu-Chr9:34115303 1.80E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1923 - - - 0.0