Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1931 ATGATGTCGGACGGTTTGATCTTTAACCGATCCCAAGGTCACGCCAACATGTTGTTTTTCGGAAGTGGTGATTCCATTCTTCGAGGACCAAGTTTCACGATGGGGATGGAGGAAACTTCAAAGAGGCGACCCTTTTTCAGCTCTCCGGATGACCTGTTTGACGATGACTACTACGATGATCAGCCACCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATTAGCTTTGAGTCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTTGCTGTGTGGTTTCAAAACCGCCGAGCTAGATGGAAGACAAAGCAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTCGTTCAAGCTACGACTTTATTGCTAAGGAGAATGAAAGGCTCAAAGCCGAGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCATCGTTTCAAGCTAAGAATCCCGAGCCATTTCTGGAGGATCAACTCCTTGTTCCTGTTGTGCAACATGGCATTAAGATTGAAGACCACCATAGTTGCAGGAGCAACGGAAGCGCTGTGCTGGACGAGGACGGTCCTCAACTCTTAGACAGTGGGGATTCGTACCTCTTGAGCAATGACTATGATGGTTGTGTTTTGCCAGTTTTTGGAGTGAACTCGGAGGAGGAAGATGGGAGTGACGATGGTCAGGGTTACTTCTCGGATGTTTATACAACGGCCGATCAGCAGACTCACGAGGGAGAGCCTTTGACCTGGTGGGACTGGACATCGTAA 837 47.91 MMSDGLIFNRSQGHANMLFFGSGDSILRGPSFTMGMEETSKRRPFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFESENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFIAKENERLKAEVASLTEKLQAKEVVESSFQAKNPEPFLEDQLLVPVVQHGIKIEDHHSCRSNGSAVLDEDGPQLLDSGDSYLLSNDYDGCVLPVFGVNSEEEDGSDDGQGYFSDVYTTADQQTHEGEPLTWWDWTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34194018 34196055 - ClG42_09g0193100.10 Clacu09g1931 258239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1931 278 FunFam Homeobox-leucine zipper protein HAT5 58 122 - -
Clacu09g1931 278 Coils Coil 140 167 - -
Clacu09g1931 278 Gene3D - 58 126 - -
Clacu09g1931 278 Pfam Homeodomain 65 118 IPR001356 GO:0003677(InterPro)
Clacu09g1931 278 SMART HOX_1 63 124 IPR001356 GO:0003677(InterPro)
Clacu09g1931 278 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu09g1931 278 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677(InterPro)
Clacu09g1931 278 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677(InterPro)
Clacu09g1931 278 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677(InterPro)
Clacu09g1931 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 38 198 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Clacu09g1931 278 SUPERFAMILY Homeodomain-like 48 122 IPR009057 -
Clacu09g1931 278 CDD homeodomain 65 121 IPR001356 GO:0003677(InterPro)
Clacu09g1931 278 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1931 Clacu-Chr9:34194018 Clacu10g0858 Clacu-Chr10:17583141 1.50E-23 dispersed
Clacu10g1424 Clacu-Chr10:27376278 Clacu09g1931 Clacu-Chr9:34194018 2.10E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48386 PF00046 Homeodomain 3.40E-17 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1931 K09338 - csv:101210106 502.671