Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1939 ATGGATCATTCACTCGAGACGTCGAGGCACAAGTGTGCAGCTTGTTTCAGACAATTCAACAAGATAGAGCATTTGGTAGATCATATGAGGACTTCTTTTCACTCACATCATGAACCCACTTGTGCCATTTGCAAGAAACATTGTCGATCTCTTGATTCTCTTAGAGAACATCTCATTGGGCCACTGCCAAAACAAGAATGCAAAAACATATATGCTACACGAGGATGCAAGTTTTGCTTGGCCATCCTTGACAGTTCTTACTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCGGCTGTAAATTCTGGACTTCTTGCTCGTTTCGCCAACTTGGGAATTCGTGACGGTTCGACTGTCATCGATAGCGGAAGAACTCGAGGCTCGGGCGCCGTGGCGTTAGCTTGCAAATATGTAGGTGGGGGCAGCGATGGGTCGCTGGACATATGCGCCAAGGTTTGCCTTATTGATGAGAGCGAAAATGTCATCTTCTATAGCTATGTCAAGCCCATAATTCCTGTCACAAATTATAGGTATGAAACGGTGGGAATTCGTCCAGAACACATTCGAGATGCAATGCCACTAAAGCAAGTTCAAAAGAAAATTCAAGATATCCTCTACAATGGAGGTGAGAAGGCTAGGATTCTTGTGGGTCACTTTGTCGAAGATGATCTCAAACGTCTACAAATCGGATACCCATCCGTCATGATAAGGGACACAGCAAATTATCCGCCATTGATGAAGACGAGCAAGCTTTGCAATTCACTCAAATATCTAGCTCAAGTGTATCTAGGATTTGAGCTACAAAATGGGATACAAGAACCTTATGAAGAATGTATTGTGGCCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGAAACATCCAATGGCTTCTGACCCACAAAACAAAAATAACTTTGCTAATTGGAGGGAAAATGAGCTTCAAAGGATGAGTCCAGAACAAATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGACTCGAGGATTTGA 1035 42.71 MDHSLETSRHKCAACFRQFNKIEHLVDHMRTSFHSHHEPTCAICKKHCRSLDSLREHLIGPLPKQECKNIYATRGCKFCLAILDSSYSQRLHQERCQFSAVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGSDGSLDICAKVCLIDESENVIFYSYVKPIIPVTNYRYETVGIRPEHIRDAMPLKQVQKKIQDILYNGGEKARILVGHFVEDDLKRLQIGYPSVMIRDTANYPPLMKTSKLCNSLKYLAQVYLGFELQNGIQEPYEECIVAMRLYKRMRSQVHRIEKHPMASDPQNKNNFANWRENELQRMSPEQMLEISRSDYYCWCMDSRI 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34261327 34265182 - ClG42_09g0193900.10 Clacu09g1939 258247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1939 344 SUPERFAMILY Ribonuclease H-like 145 291 IPR012337 -
Clacu09g1939 344 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Clacu09g1939 344 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 6 342 IPR047021 GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER)
Clacu09g1939 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 39 IPR013087 -
Clacu09g1939 344 SMART exoiiiendus 130 295 IPR013520 -
Clacu09g1939 344 Gene3D - 128 309 IPR036397 GO:0003676(InterPro)
Clacu09g1939 344 CDD REX4_like 132 287 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0343 Clacu-Chr4:12147205 Clacu09g1939 Clacu-Chr9:34261327 3.30E-79 dispersed
Clacu09g1938 Clacu-Chr9:34240655 Clacu09g1939 Clacu-Chr9:34261327 8.30E-68 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1939 - - - 0.0