Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1946 ATGGAGAATCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGTGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACTGCTGGTCACCACCTCTGGGTTGTGATGCCATATATGTCTGGTGGATCTTGCCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCCACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCTGATTTTGGAGTCTCAGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTTATGACATTACAAAATGCTCCCCCTGGTCTTGACTATGAAAGAGATAAGAGATTTTCTAAGTCATTCAAAGAAATGGTCGCTACATGCTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCTGAGAAGCTGCTAAAGCACCCTTTTTTTAAACATGCTCGTTCAGTTGATTATCTTGCTCGAACAATCCTGGATGGCCTTGATCCGTTAGGGGAACGTTTTAAGAAGCTAAAGGCCAAAGAGGCTGATCTTCTGGGACAAAACAAGGCTTTGTATGGGGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAATCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGACGATGTGTCAAACATAGAAGATCTAGATGTACATACTACACAGCAAAGAAACAAGAATAATGAGTTTACCTTTCCAGTAGAGGGTTCATCCCTTGAAAGACTGAATCACCCTACTGCTGCAGCTAGTCAGGAGGATGGTTTTAACGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTTCCTATAAAACCTCTTGAAGCACTCAAAGATTGTTTTGATATCTATGAAGATATAAGCACGGACAGTGTAAGGCCAGTGGATAGAGAAAATGGAAGAACGGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTCAGAGAACAAGAGGTCTTTTAGCGGTTCACTAATTTCTGACAATGCTGTTTCTCCTAAAAAGACTATTGCAGATGGTGATAGGGACTATTTGCAGTCAAAACCTCCATCTGAGCGTAATTACAGTGGTCCACTATTATATCGCCAGAAAAGGGATACAAATAATGTTTCATCTGTTGAGGATGCATCAGATGGAACAGTTGTTCAACGCAAGGGGCGGTTCAAAGTTACTTCAGCGGAGCTTAGTCCAAAGGGTCCTATGACGGGCTCATTTAGCCCTGTCTGTGGAGGGACGATAAGTCCAACATCCCTGAACCTCACACCTGCTCTACTCCTCCCATCAATGCAATGCATTTTGCAGCAGAACATCCTTCAACGGGAAGAAATTGTTAAATTGATCAAGTGTTTGGAACAAATGACTGGCAAGAATCCAGATGTTTCAGAGGCGGTCACCAGTGACCTTCTGCAGGTACCACCAACTTCCTTGAGGGAAAGAGAGTTACAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATCATCTTGTTGAGGAATTAGAGAAGCAAAAGTTGAAAAATGCGGAGTTTGAAAAACACATGATTTCTATGGCAAATAAAGAGAAAACATAA 2016 41.96 MENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGERFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDVSNIEDLDVHTTQQRNKNNEFTFPVEGSSLERLNHPTAAASQEDGFNDLHDLESSLASFPIKPLEALKDCFDIYEDISTDSVRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKTIADGDRDYLQSKPPSERNYSGPLLYRQKRDTNNVSSVEDASDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNILQREEIVKLIKCLEQMTGKNPDVSEAVTSDLLQVPPTSLRERELQSQVVHLQQRIDHLVEELEKQKLKNAEFEKHMISMANKEKT 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34349714 34358762 + ClG42_09g0194600.10 Clacu09g1946 258254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1946 671 Gene3D Transferase(Phosphotransferase) domain 1 97 311 - -
Clacu09g1946 671 SMART serkin_6 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1946 671 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1946 671 MobiDBLite consensus disorder prediction 481 507 - -
Clacu09g1946 671 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Clacu09g1946 671 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
Clacu09g1946 671 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
Clacu09g1946 671 MobiDBLite consensus disorder prediction 449 464 - -
Clacu09g1946 671 CDD STKc_OSR1_SPAK 14 277 - -
Clacu09g1946 671 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1946 671 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 657 IPR047173 GO:0043539(InterPro)
Clacu09g1946 671 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Clacu09g1946 671 Coils Coil 627 661 - -
Clacu09g1946 671 MobiDBLite consensus disorder prediction 437 464 - -
Clacu09g1946 671 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0674 Clacu-Chr6:7766196 Clacu09g1946 Clacu-Chr9:34349714 6.50E-36 dispersed
Clacu09g1946 Clacu-Chr9:34349714 Clacu10g0086 Clacu-Chr10:1161444 2.30E-150 dispersed
Clacu09g1946 Clacu-Chr9:34349714 Clacu05g0512 Clacu-Chr5:4272361 3.40E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73846 PF00069 Pkinase 2.80E-60 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1946 K08835 - csv:101205102 1324.3