Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1946 ATGGAGAATCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGTGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACTGCTGGTCACCACCTCTGGGTTGTGATGCCATATATGTCTGGTGGATCTTGCCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCCACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCTGATTTTGGAGTCTCAGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTTATGACATTACAAAATGCTCCCCCTGGTCTTGACTATGAAAGAGATAAGAGATTTTCTAAGTCATTCAAAGAAATGGTCGCTACATGCTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCTGAGAAGCTGCTAAAGCACCCTTTTTTTAAACATGCTCGTTCAGTTGATTATCTTGCTCGAACAATCCTGGATGGCCTTGATCCGTTAGGGGAACGTTTTAAGAAGCTAAAGGCCAAAGAGGCTGATCTTCTGGGACAAAACAAGGCTTTGTATGGGGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAATCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGACGATGTGTCAAACATAGAAGATCTAGATGTACATACTACACAGCAAAGAAACAAGAATAATGAGTTTACCTTTCCAGTAGAGGGTTCATCCCTTGAAAGACTGAATCACCCTACTGCTGCAGCTAGTCAGGAGGATGGTTTTAACGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTTCCTATAAAACCTCTTGAAGCACTCAAAGATTGTTTTGATATCTATGAAGATATAAGCACGGACAGTGTAAGGCCAGTGGATAGAGAAAATGGAAGAACGGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTCAGAGAACAAGAGGTCTTTTAGCGGTTCACTAATTTCTGACAATGCTGTTTCTCCTAAAAAGACTATTGCAGATGGTGATAGGGACTATTTGCAGTCAAAACCTCCATCTGAGCGTAATTACAGTGGTCCACTATTATATCGCCAGAAAAGGGATACAAATAATGTTTCATCTGTTGAGGATGCATCAGATGGAACAGTTGTTCAACGCAAGGGGCGGTTCAAAGTTACTTCAGCGGAGCTTAGTCCAAAGGGTCCTATGACGGGCTCATTTAGCCCTGTCTGTGGAGGGACGATAAGTCCAACATCCCTGAACCTCACACCTGCTCTACTCCTCCCATCAATGCAATGCATTTTGCAGCAGAACATCCTTCAACGGGAAGAAATTGTTAAATTGATCAAGTGTTTGGAACAAATGACTGGCAAGAATCCAGATGTTTCAGAGGCGGTCACCAGTGACCTTCTGCAGGTACCACCAACTTCCTTGAGGGAAAGAGAGTTACAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATCATCTTGTTGAGGAATTAGAGAAGCAAAAGTTGAAAAATGCGGAGTTTGAAAAACACATGATTTCTATGGCAAATAAAGAGAAAACATAA 2016 41.96 MENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGERFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDVSNIEDLDVHTTQQRNKNNEFTFPVEGSSLERLNHPTAAASQEDGFNDLHDLESSLASFPIKPLEALKDCFDIYEDISTDSVRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKTIADGDRDYLQSKPPSERNYSGPLLYRQKRDTNNVSSVEDASDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNILQREEIVKLIKCLEQMTGKNPDVSEAVTSDLLQVPPTSLRERELQSQVVHLQQRIDHLVEELEKQKLKNAEFEKHMISMANKEKT 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34349714 34358762 + ClG42_09g0194600.10 Clacu09g1946 258254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1946 671 Gene3D Transferase(Phosphotransferase) domain 1 97 311 - -
Clacu09g1946 671 SMART serkin_6 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1946 671 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1946 671 MobiDBLite consensus disorder prediction 481 507 - -
Clacu09g1946 671 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Clacu09g1946 671 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
Clacu09g1946 671 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
Clacu09g1946 671 MobiDBLite consensus disorder prediction 449 464 - -
Clacu09g1946 671 CDD STKc_OSR1_SPAK 14 277 - -
Clacu09g1946 671 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1946 671 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 657 IPR047173 GO:0043539(InterPro)
Clacu09g1946 671 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Clacu09g1946 671 Coils Coil 627 661 - -
Clacu09g1946 671 MobiDBLite consensus disorder prediction 437 464 - -
Clacu09g1946 671 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1946 K08835 - - csv:101205102 1324.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0674 Clacu-Chr6:7766196 Clacu09g1946 Clacu-Chr9:34349714 6.50E-36 dispersed
Clacu09g1946 Clacu-Chr9:34349714 Clacu10g0086 Clacu-Chr10:1161444 2.30E-150 dispersed
Clacu09g1946 Clacu-Chr9:34349714 Clacu05g0512 Clacu-Chr5:4272361 3.40E-93 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu11g1974 . 99 786 MAP Kinase Kinase Kinase Kinase AT1G53165 63.7 3.0e-225 778.5
Clacu07g0694 . 326 586 MAP Kinase Kinase Kinase Kinase AT1G53165 53.4 3.9e-68 256.5
Clacu11g1352 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 7.4e-67 252.3
Clacu11g1974 . 99 783 MAP Kinase Kinase Kinase Kinase AT3G15220 65.9 3.6e-231 798.1
Clacu07g0694 . 326 586 MAP Kinase Kinase Kinase Kinase AT3G15220 51.9 1.8e-68 257.7
Clacu11g1352 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 3.3e-67 253.4
Clacu07g0694 . 60 898 MAP Kinase Kinase Kinase Kinase AT1G69220 58.0 3.1e-242 835.1
Clacu11g1352 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 1.2e-241 833.2
Clacu09g1946 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 5.6e-253 870.5
Clacu05g0512 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.5e-96 350.9
Clacu10g0086 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 5.8e-248 854.0
Clacu10g0086 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.8 2.8e-247 851.7
Clacu10g0086 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 4.7e-118 422.2
Clacu09g1946 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.6e-103 372.9
Clacu10g0086 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.3e-75 280.0
Clacu05g0512 . 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.0 2.6e-143 505.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73846 PF00069 Pkinase 2.80E-60 CL0016 Clacu PK