Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1956 ATGCAGAATAACGCTGTATTGGCTTTGGCTATGTCTTTTTCCCCTAATTCTATTGCTACGGCTACTGCTATTCCATGCCCTAGCCGAAGCCCTAATTTCCCTCACTTTTCCCACATTCTTCAATTTCGTTCTCAATGTTCCATCTCATGGCGTTCTTCTTCATCCATCTCTCTTTTTTCTTCTCGATTTACTCCGAGGTTTCAGAAATTTGCCATAATGGCTGCTTCTGTGCCGGAGAGTGCCGGCGAGGCTGTGGAATCCGCTGATTTCGTTCATAATCTCCGGCTTGGTGCAATGTTTGGGGTTTGGTACCTTTTGAATATCTACTACAATATTTTCAACAAACAGGTTCTGAAAGCCTTTCCCTTTCCAACTACGGTCACAGCTTTCCAGTTCGGCTGTGGTACGGTCATAGTAAACTTAATGTGGGCTCTTCATTTTCACCATAGACCCAAGATCAATCGATCCCAGTTTGCTGCCATTCTTCCGCTGGCTGTAGCGCACACACTGGGAAACATATTAACCAATGTGAGTCTTGGGAGAGTTGCGGTTTCATTCACTCACACCATCAAAGCAATGGAGCCATTTTTCACTGTCCTTCTCTCTGCTTTGTTTTTGGCTGAGAGGCCCACATTTTGGGTTGTTTTTTCTCTGGTACCCGTTGTAGGAGGAGTGGCACTTGCTTCTTTCACTGAAGCCTCATTTAATTGGATTGGCTTCAGCAGTGCCATGGCTTCCAATCTTACCAATCAATCACGTAATATCTTCAGCAAAAAGTTCATGGTCCACAAAGAGGCATTGGACAATATCAATCTCTTCTCTGTACTTACTATCATTTCGTTTATCCTGTTGGTTCCCTCGGCCCTTCTCCTTGAAGGCAGTAAACTTAGTCCTTCATACCTGCAATTAGCGGCAAATCAAGGGTTGAATATTAGGGAGCTATGCATTAGGTTGCTTCTATCTGGCATCTGTTTCCATAGTTATCAGCAGGTTTCTTATTCAATACTACAGGAAATTTCACCAGTGAGCCATGCAGTAGGAAATTCTTTGAAGCGTGTGGTGGTTATAGGGTCCTCCGTTATTTTCTTCCAAACAGCAGTTTCACCTCTAAACGCCCTAGGAACTGGCATAGCTCTTGTGGGAGTTTTCTTGTATTCAAGGGCAAAGCGTATGAAGCCAAAGCTTAAGTCTTTGTAA 1197 43.78 MQNNAVLALAMSFSPNSIATATAIPCPSRSPNFPHFSHILQFRSQCSISWRSSSSISLFSSRFTPRFQKFAIMAASVPESAGEAVESADFVHNLRLGAMFGVWYLLNIYYNIFNKQVLKAFPFPTTVTAFQFGCGTVIVNLMWALHFHHRPKINRSQFAAILPLAVAHTLGNILTNVSLGRVAVSFTHTIKAMEPFFTVLLSALFLAERPTFWVVFSLVPVVGGVALASFTEASFNWIGFSSAMASNLTNQSRNIFSKKFMVHKEALDNINLFSVLTIISFILLVPSALLLEGSKLSPSYLQLAANQGLNIRELCIRLLLSGICFHSYQQVSYSILQEISPVSHAVGNSLKRVVVIGSSVIFFQTAVSPLNALGTGIALVGVFLYSRAKRMKPKLKSL 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34444112 34451518 - ClG42_09g0195600.10 Clacu09g1956 258264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1956 398 Pfam Triose-phosphate Transporter family 94 386 IPR004853 -
Clacu09g1956 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 311 391 - -
Clacu09g1956 398 PANTHER SOLUTE CARRIER FAMILY 35 94 389 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Clacu09g1956 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 141 231 - -
Clacu09g1956 398 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 94 395 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1956 Clacu-Chr9:34444112 Clacu10g0539 Clacu-Chr10:6484350 1.10E-57 dispersed
Clacu01g2286 Clacu-Chr1:33841197 Clacu09g1956 Clacu-Chr9:34444112 7.10E-56 transposed
Clacu05g2572 Clacu-Chr5:33644545 Clacu09g1956 Clacu-Chr9:34444112 7.50E-54 transposed
Clacu01g1369 Clacu-Chr1:25023010 Clacu09g1956 Clacu-Chr9:34444112 2.00E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1956 K15283 - csv:101217436 672.544