Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1968 ATGGCTTCTTCAAGCTTCTCAAACTCACCATGTGCAGCATGCAAATTCCTAAGAAGAAAATGCTTAGCCGATTGCATATTTGCGCCCTACTTTCCTCCTGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTTCTCAATGAGGTCCAGCCCCATCAGCGCGAGGACGCCGTAAATTCTCTAGCCTACGAGGCCGAGGCTCGTATGAAAGACCCCGTCTATGGTTGTGTCGGGGCCATCTCCGCTCTACAAAGACAAGTCATTCGCTTGCAGAAAGAGCTCGATGCTACAAATGCTGATTTAGTGCGATATGCAAGCGGGGGCGCTCGCCCGCCCTCGCAATTTGGAAGAAGGGCAGCAACTGCCTCGATGACTCGCCATCATTCTGACCTGTCTTTTCTTTCTCCCTTGAGTAGTAATGATCATGATGATCCTTATTGCCATGATAAAGAGGAAGACAATTGA 492 48.78 MASSSFSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISALQRQVIRLQKELDATNADLVRYASGGARPPSQFGRRAATASMTRHHSDLSFLSPLSSNDHDDPYCHDKEEDN 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34538593 34539084 - ClG42_09g0196800.10 Clacu09g1968 258276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1968 163 MobiDBLite consensus disorder prediction 134 148 - -
Clacu09g1968 163 Coils Coil 89 109 - -
Clacu09g1968 163 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Clacu09g1968 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 118 - -
Clacu09g1968 163 MobiDBLite consensus disorder prediction 119 163 - -
Clacu09g1968 163 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1968 Clacu-Chr9:34538593 Clacu11g1302 Clacu-Chr11:22050335 7.90E-44 dispersed
Clacu08g1860 Clacu-Chr8:27903692 Clacu09g1968 Clacu-Chr9:34538593 1.50E-17 transposed
Clacu01g1388 Clacu-Chr1:25208404 Clacu09g1968 Clacu-Chr9:34538593 4.30E-45 wgd
Clacu10g1381 Clacu-Chr10:26924184 Clacu09g1968 Clacu-Chr9:34538593 2.90E-58 wgd
Clacu06g1830 Clacu-Chr6:28860152 Clacu09g1968 Clacu-Chr9:34538593 1.80E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48389 PF03195 LOB 3.20E-42 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1968 - - - 0.0