Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1974 ATGGGGTCCGGTAATGGGTTATGTTCAAAAGAGTTTGATTTGGATGCTAAGTGGCTGGTTGATCCGAAGCAAATCTTTGTTGGGCCAAGGATTGGGGAGGGCGCGCATGGCAAAGTGCACAAGGGGAAATATAAAGACCAAAATGTTGCAATTAAAATAATTCGGAAAGGTGAAACCCCAGAAGATATTGCCAAAACTGAGGCACGCTTTGCTCGGGAGGTTGCTATGTTATCCAGAGTTCAACACAAGAATCTTGCGAAGTTTATAGGTGCTTGCAAGGAGCCTATTATGGTGATAGTGACTGAGCTTCTTTTAGGCGGTACATTAAGGAAGTACCTGTTGAGTATAAGGCCAAGGTGCTTGGACTTCAATGAGGCAGTTGGCTTTGCACTTGATATTGCACGTGCAATGGAATGCTTGCATTCGCATGGCATCATTCACCGTGACCTCAAGCCTGAGAATTTGATCTTGACTGCAGACCACAAAACCGTTAAACTTGCTGATTTTGGTCTTGCTAGAGAAGAGTCGGTAACAGAGATGATGACGGCTGAAACTGGGACTTACAGATGGATGGCTCCGGAGCTATACAGTACAGTAACTTTACGAAATGGAGAGAAGAAGCATTACAATCACAAGGTGGATGTTTACAGCTTTGGAATTGTATTCTGGGAGATTATCCGAAATAAGTTGCCTTTCGAAGGCATGTCAAATCTACAAGCAGCATATGCAGCTGCTTTTAAGAATTTACGACCGACTGCTGAGAACCTCCCACCGGATTTAGCACCTATTGTGACTTCCTGTTGGACAGAGGACCCAAACGATCGGCCTAACTTCAACCAAATCATACAAATGCTCTTGAAATGTCTATCCACCATTCCACAACCAGAGTATGTTGCACCACCACCATTGATGCACCCACCTGAGAATGCAGTTTTGCCACCAGAGTCTCCTGGAACAAGTTCTTTGATGGCAGCCACAAGACATGGCACGAGGGAAGTCCTGAACAGCGAGATGGAAGAGAAACCGAGTAGTTTCTTCTCGTGTTTCACTGGCGAAAATAAAGAATATCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCTTGAGAGCATCACCTACATAA 1164 45.7 MGSGNGLCSKEFDLDAKWLVDPKQIFVGPRIGEGAHGKVHKGKYKDQNVAIKIIRKGETPEDIAKTEARFAREVAMLSRVQHKNLAKFIGACKEPIMVIVTELLLGGTLRKYLLSIRPRCLDFNEAVGFALDIARAMECLHSHGIIHRDLKPENLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRNGEKKHYNHKVDVYSFGIVFWEIIRNKLPFEGMSNLQAAYAAAFKNLRPTAENLPPDLAPIVTSCWTEDPNDRPNFNQIIQMLLKCLSTIPQPEYVAPPPLMHPPENAVLPPESPGTSSLMAATRHGTREVLNSEMEEKPSSFFSCFTGENKEYRRCRGSNPGHPRDRREYSPLYYNDFLRASPT 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34605951 34609453 + ClG42_09g0197400.10 Clacu09g1974 258282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1974 387 Gene3D Phosphorylase Kinase; domain 1 13 104 - -
Clacu09g1974 387 PANTHER SERINE-THREONINE PROTEIN KINASE 20 287 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu09g1974 387 ProSitePatterns Protein kinases ATP-binding region signature. 31 56 IPR017441 GO:0005524(InterPro)
Clacu09g1974 387 SMART serkin_6 25 292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1974 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1974 387 PRINTS Tyrosine kinase catalytic domain signature 139 157 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1974 387 PRINTS Tyrosine kinase catalytic domain signature 256 278 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1974 387 PRINTS Tyrosine kinase catalytic domain signature 101 114 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1974 387 PRINTS Tyrosine kinase catalytic domain signature 213 235 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1974 387 Gene3D Transferase(Phosphotransferase) domain 1 106 297 - -
Clacu09g1974 387 SUPERFAMILY Protein kinase-like (PK-like) 17 320 IPR011009 -
Clacu09g1974 387 FunFam Kinase suppressor of Ras 1 14 104 - -
Clacu09g1974 387 Pfam Protein tyrosine and serine/threonine kinase 30 285 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1974 387 ProSiteProfiles Protein kinase domain profile. 25 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1974 387 CDD STKc_MAP3K-like 31 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1974 Clacu-Chr9:34605951 Clacu10g2232 Clacu-Chr10:35290419 2.70E-114 dispersed
Clacu10g1370 Clacu-Chr10:26782601 Clacu09g1974 Clacu-Chr9:34605951 1.40E-149 wgd
Clacu06g1845 Clacu-Chr6:28974531 Clacu09g1974 Clacu-Chr9:34605951 3.30E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73847 PF07714 PK_Tyr_Ser-Thr 4.10E-58 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1974 - - - 0.0