Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu09g1984 | ATGGAAGTTATTGGTATAAGTTTGAACCCTATGATTATTATTGTATTAGCTTTGAGCTTTGCAATATTAATCATCTCCCACTCTCTTCTTAAACTCTTTGTAATTACTTCAACACCAAACCCTAATTTGCCTCCTGGCTGCATGGGCTTCCCCTTTGTTGGAGAGACTCTCAGCTTTCTCAAACCTCATCATTCTAACTCAATTGGAACCTTCCTTCAACACCATTGCTCCAGGTATGGGAAGGTTTTCAAATCTCATCTATTCGGTTGGCCGGCGATAGTGTCATGTGATCGAGAGCTTAATGTCTTCATTCTTCAAAACGACGATAAGCTTTTCAAAGTGAGTTATCCAAAAGCCATGCATGGCATTCTCGGAACAAATTCTTTGATTATCGCCGCCGGCCACACCCACCGGAAGCTCCGAAACGTCGTCGTTAGCTTCACCAGTTGGTGCAAATCTAGACCATCTTTCCTTCACTCCCTCCATAATCTCTCTATCTCTTTAATGGACTCTTGGAGATCCCAAACTCAACTCCTTTTCTGCAAAGAACTCAAAATGTTTGCTTTAAGCGTTATGGTGAAGGAGCTATTGGGCATCAAAGCAAACGAGTCCATAGGATCAAAGATATTAGAAGAGTTCGAAACGTATATGAAAGGCTTTGTTTCTTTACCTTTAAATTTGCGAGGAACTCCCTATTCTAAAGCTGTTAAGGCTAGGGGGAGACTTTCTTACATTGTGAAAGAGATGATGAGAGAGAGGAAAAGGAGGGGATTATTGGAAGGGAATGATGAGGATTTTCTACAAGTGATAATGTCAAATTGGAAGCTTAGTGATGAAGAAATTGTGAGTGTTGTTTTGGACATATTGCTTGGAGGTTATGAGACAACAGCTACCCTCATGGGATTGATTGTCTATTTTCTTGCACATTCACCTCCTAATGTTCTTGCAAAATTAAAGGAAGAACATGAAGCAATAAGAATTGGAAAACGGAATGGAGAATATCTCAATTTGGAAGATTATAAGCAAATGGATTTCACATGCAATGTGATATTCGAAGCCATGAGATGTGGGAATGTGGTGAAGTTTTTACATAGAGAAGCTCTTGCAGATGTCAAATTCAAAGATATTGTCATACCCTCTGGATGGAAAGTTCATCCAGTTTTCTCAGCAATTCATCTTGATCCAACCCTCCATCCAAATCCTCAACAATTTAATCCTTGGAGATGGACTGTAAGGACAAGGGCATATGAAGCGATTGGCAAGACAATACTATACGAACTGGAAACGAGTTTATGCGCCGCCCCCAGTTTCATCCCCATCCCTTATTGTCCTCTTCTTCTCCGGCGAGTATCTCCGGTGACCGGTGGTAGTGTGTGCGCTGAATCCAGCCAGCGACCTGCACCGTTTACCCGCACGGACACAGCGACCATTGCGCCCCGGCGAACGCCTCCTCTCGACGTGATTTCGCTCATGCAACTAACGCATGAGCAAGACGCCGACAACCCACACCAATCGGACCTTGAATCACCTTGGGTTCAAACTCAATCTAGCACGTTCCAGCAAGATTCGACTTTTAGTAAGATGTCCAAGGAGGAGAGCTTTGAAGTTAATTTAACAACCGACTGCAGCCCAGAATCTAGTAAGAAAAGAGCAAAAAGAAGAAAAAACAAAAAGAAGCAGTTATTGATGGAAGGTGTAGATGTCGCGGAAATGAAAGAGGTAGGATCCGTTCAGCTGGGGGAAAGCAACATAAACTCCGATAGTGACAAAGTGAAAAAGAAGAAAAAGAGAAAGAAGAGTACTCAACAATATGTAGAGGAGAGCTCTATCAAGGATGAGGCAGGAGAATATGAAAATAGAGCAGAGACTTTTATGAAAGAGGGCAGTCCTTTCTCTAATGGTGGAAGTGAGAAAATTTTCGAAAAGAGGAAAATTGCATTGGAAGATGCTGAGAATGAAAGGACTGACAGCATGGTCAGAGAAAACTCTGAAGAGAAGATTCTAGAGTCTAACAATGGAAAAGCAGATCAAAGGAATATTAAGAGGAAGAAGCGGCTCTTAAAGGAAGCAGCAAATGCAGATATGCGTGGTATTTGTTACTTGAGCCGAGTTCCTCCACACATGGATCCTTTGAGACTTCGTCAGATCCTCTCACAGTATGGGGAAATACAAAGAATTTATCTTGCACCCGAGGATGCTGCCAGTCAAGTACAACGAAAGCGTGCAGGAGGCTTTCGAGGACAGTTTTTTTCAGAAGGGTGGGTTGAATTTACTGATAAAAGAGTTGCCAAGAAGGTGGCTAATATGTTAAATGGTGAACAGATAGGAGGAAGGAAGAGGTCATCTTTTTACTATGATCTCTGGAACATCAAGTATTTGAGTAAATTCAAGTGGGATGATCTCACTGAAGAAACTGCTTACAAGCATGCCATTCGGGAGCAGAAACTGGCTTTAGAAATTTCTGCTGCCAAGAGGGAAAGGGATTTCTATCTTGCGAAAGTGGATAAATCACGTGCATTGAATTCCATTGAAGAACGGCTAAAGAAGAAGCAGAAGTTGCGAAAAGATTCAGAAATGAATTCTGCACTTGCTGATAGCCAGAAACTTCCAAAGTTGATCCGCAGCTTCCCACAAACACAACCAGTTGCACATTCTGCAGTACAAAACAAACAGAGACTATCTACAAATGTCCTGGCTGGGGTGTTTGGAAGTTCCTAG | 2718 | 42.13 | MEVIGISLNPMIIIVLALSFAILIISHSLLKLFVITSTPNPNLPPGCMGFPFVGETLSFLKPHHSNSIGTFLQHHCSRYGKVFKSHLFGWPAIVSCDRELNVFILQNDDKLFKVSYPKAMHGILGTNSLIIAAGHTHRKLRNVVVSFTSWCKSRPSFLHSLHNLSISLMDSWRSQTQLLFCKELKMFALSVMVKELLGIKANESIGSKILEEFETYMKGFVSLPLNLRGTPYSKAVKARGRLSYIVKEMMRERKRRGLLEGNDEDFLQVIMSNWKLSDEEIVSVVLDILLGGYETTATLMGLIVYFLAHSPPNVLAKLKEEHEAIRIGKRNGEYLNLEDYKQMDFTCNVIFEAMRCGNVVKFLHREALADVKFKDIVIPSGWKVHPVFSAIHLDPTLHPNPQQFNPWRWTVRTRAYEAIGKTILYELETSLCAAPSFIPIPYCPLLLRRVSPVTGGSVCAESSQRPAPFTRTDTATIAPRRTPPLDVISLMQLTHEQDADNPHQSDLESPWVQTQSSTFQQDSTFSKMSKEESFEVNLTTDCSPESSKKRAKRRKNKKKQLLMEGVDVAEMKEVGSVQLGESNINSDSDKVKKKKKRKKSTQQYVEESSIKDEAGEYENRAETFMKEGSPFSNGGSEKIFEKRKIALEDAENERTDSMVRENSEEKILESNNGKADQRNIKRKKRLLKEAANADMRGICYLSRVPPHMDPLRLRQILSQYGEIQRIYLAPEDAASQVQRKRAGGFRGQFFSEGWVEFTDKRVAKKVANMLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKLALEISAAKRERDFYLAKVDKSRALNSIEERLKKKQKLRKDSEMNSALADSQKLPKLIRSFPQTQPVAHSAVQNKQRLSTNVLAGVFGSS | 905 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 34706283 | 34719695 | - | ClG42_09g0198400.10 | Clacu09g1984 | 258292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu09g1984 | 905 | SUPERFAMILY | RNA-binding domain, RBD | 693 | 779 | IPR035979 | GO:0003676(InterPro) | |
| Clacu09g1984 | 905 | Pfam | RNA recognition motif | 700 | 779 | IPR000504 | GO:0003723(InterPro) | |
| Clacu09g1984 | 905 | SMART | rrm1_1 | 698 | 782 | IPR000504 | GO:0003723(InterPro) | |
| Clacu09g1984 | 905 | Gene3D | Cytochrome P450 | 35 | 420 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g1984 | 905 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 697 | 779 | IPR000504 | GO:0003723(InterPro) | |
| Clacu09g1984 | 905 | SUPERFAMILY | Cytochrome P450 | 40 | 411 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g1984 | 905 | MobiDBLite | consensus disorder prediction | 497 | 559 | - | - | |
| Clacu09g1984 | 905 | MobiDBLite | consensus disorder prediction | 651 | 682 | - | - | |
| Clacu09g1984 | 905 | MobiDBLite | consensus disorder prediction | 497 | 544 | - | - | |
| Clacu09g1984 | 905 | Pfam | Cytochrome P450 | 44 | 412 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g1984 | 905 | CDD | RRM_ABT1_like | 697 | 794 | IPR034353 | - | |
| Clacu09g1984 | 905 | Coils | Coil | 840 | 860 | - | - | |
| Clacu09g1984 | 905 | Gene3D | - | 632 | 782 | IPR012677 | - | |
| Clacu09g1984 | 905 | MobiDBLite | consensus disorder prediction | 579 | 612 | - | - | |
| Clacu09g1984 | 905 | PRINTS | E-class P450 group I signature | 280 | 297 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g1984 | 905 | PRINTS | E-class P450 group I signature | 76 | 95 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g1984 | 905 | PRINTS | E-class P450 group I signature | 387 | 411 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g1984 | 905 | PANTHER | ACTIVATOR OF BASAL TRANSCRIPTION 1 | 600 | 904 | IPR039119 | GO:0000447(PANTHER)|GO:0000472(PANTHER)|GO:0000480(PANTHER)|GO:0003723(PANTHER)|GO:0005730(PANTHER)|GO:0034462(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu07g0913 | Clacu-Chr7:22881363 | Clacu09g1984 | Clacu-Chr9:34706283 | 7.30E-85 | dispersed | |
| Clacu09g1984 | Clacu-Chr9:34706283 | Clacu10g0186 | Clacu-Chr10:2165545 | 3.00E-44 | dispersed | |
| Clacu09g1984 | Clacu-Chr9:34706283 | Clacu09g0062 | Clacu-Chr9:628159 | 3.80E-55 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu09g1984 | K12639 | - | csv:101215045 | 675.241 |