Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1989 ATGGCGGCTTCTTCTTCTCTTTACTTTTTCTTGCTTCTTTTATCTCTTTCTTTCTTCTTGACTATGACTGCTCCAACTTCCAATTCCTCATTGCCTTTGTCTCTTCATCAACATCCTAATCTTGTTGTTCAAGAAGTTCAAAGGAGCATAAATGCATCAAGGAGAAACTTGGGATATTTCTCTTGCGGAACAGGAAACCCAATAGACGATTGCTGGAGATGCGACCCCAATTGGGAAACCAACCGTAAACGCTTAGCCGATTGCGCCATTGGATTCGGTAAAAACGCCATCGGCGGCAAAAACGGCCGTTTCTACTTAGTCACAGACGCCGGCGACGACGACCCTCTCAACCCACGCCCGGGCACTCTCCGACATGCAGTCATTCAAAACGAACCGTTATGGATCATTTTCAAACGAGACATGGTGATCCAACTCAAGCAAGAACTAGTAATGAACTCATTCAAAACCATCGACGGGCGTGGGGCCAGCGTCCACGTGGCAGGTGGTCCATGCATAACGATCCATTACGCGACAAATATCATAATCCACGGCATCCACATTCACGATTGCAAGAGAGGGGGAAATGGTAATATACGGGACTCCCCACAGCACTCTGGTTGGTGGACTGTATCGGACGGTGATGGAGTGTCGATCTTTGGAGGAAAACATATCTGGATCGACCATTGCTCTTTGTCTAATTGTAATGATGGGTTGATTGATGCGATTCATGGGTCCACAGCTATTACCATATCCAATAACTATATGACACATCATGATAAAGTGATGTTGTTGGGACATAGTGATTCCTACACACAAGATAAAGACATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAAGGACTCGTTCAGCGAATGCCAAGATGCAGACATGGGTATTTCCATGTAGTGAACAACGATTACACCCACTGGGAAATGTACGCCATCGGAGGGAGTGCTTCGCCGACGATATACAGCCAAGGGAACAGATTTGCGGCGCCCTACAACCGCTTCCGGAAGGAGGTAACAAAGCACGAGGACGCGCCGGAGAGCGAGTGGCGCCACTGGAACTGGCGCTCCGAGGGCGACATGATGTTGAACGGCGCCTATTTCCGCCAGTCTGGCGCCGGCGCTGCTTCCAGCTATGCAAGAGCTTACAGCCTCAGCGCTAGACCCTCCTCTCTCGTCGGCTCTATCACCGTCACTGCCGGCGCCCTCAACTGCCGCAAGGGCTCCCGCTGCTAG 1245 49.64 MAASSSLYFFLLLLSLSFFLTMTAPTSNSSLPLSLHQHPNLVVQEVQRSINASRRNLGYFSCGTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGKNGRFYLVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLKQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTVSDGDGVSIFGGKHIWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFAAPYNRFRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRKGSRC 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34755578 34759013 + ClG42_09g0198900.10 Clacu09g1989 258297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1989 414 Pfam Pectate lyase 146 331 IPR002022 -
Clacu09g1989 414 FunFam Pectate lyase 65 407 - -
Clacu09g1989 414 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Clacu09g1989 414 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Clacu09g1989 414 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Clacu09g1989 414 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Clacu09g1989 414 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Clacu09g1989 414 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Clacu09g1989 414 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Clacu09g1989 414 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Clacu09g1989 414 Gene3D - 65 407 IPR012334 -
Clacu09g1989 414 SMART amb_all 140 337 IPR002022 -
Clacu09g1989 414 PANTHER PECTATE LYASE 18-RELATED 20 411 IPR045032 GO:0030570(InterPro)
Clacu09g1989 414 SUPERFAMILY Pectin lyase-like 49 409 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0446 Clacu-Chr3:4864770 Clacu09g1989 Clacu-Chr9:34755578 1.30E-121 dispersed
Clacu06g0789 Clacu-Chr6:9323202 Clacu09g1989 Clacu-Chr9:34755578 2.10E-168 dispersed
Clacu08g0933 Clacu-Chr8:19464572 Clacu09g1989 Clacu-Chr9:34755578 2.10E-143 dispersed
Clacu08g1907 Clacu-Chr8:28244138 Clacu09g1989 Clacu-Chr9:34755578 2.20E-185 dispersed
Clacu09g1989 Clacu-Chr9:34755578 Clacu10g1478 Clacu-Chr10:27896404 1.00E-127 dispersed
Clacu09g1989 Clacu-Chr9:34755578 Clacu05g0400 Clacu-Chr5:3446645 5.30E-169 transposed
Clacu09g1989 Clacu-Chr9:34755578 Clacu07g0161 Clacu-Chr7:2073726 5.30E-169 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1989 K01728 - csv:101217834 778.089