Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2010 ATGGCAGATGCAGAGGACATTCAGCCTCTTGTGTGTGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGGGATGATGCTCCCCGGGCAGTCTTCCCTAGCATTGTTGGCCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATGCTTATGTTGGCGATGAAGCTCAATCCAAGCGTGGTATTTTGACCCTGAAATACCCAATTGAGCATGGTATTGTGAGCAACTGGGATGATATGGAAAAGATATGGCATCACACCTTCTATAACGAGCTTCGTGTCGCTCCAGAGGAGCATCCTGTACTCCTAACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTTAACACCCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTGTATGCCAGTGGTCGAACCACCGGCATTGTGTTGGACTCTGGTGATGGTGTCAGTCATACAGTCCCCATCTATGAGGGCTATGCTCTCCCACATGCCATTCTTCGACTCGACCTTGCTGGCCGTGATCTTACTGATAACTTGATGAAAATTCTCACAGAGCGTGGTTATTCATTCACTACCACAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAGCTTTCATATATTGCCCTTGACTATGAGCAAGAGCTTGAAACATCCAAAACCAGTTCATCAGTTGAAAAGAGCTATGAGTTGCCTGATGGACAAGTCATCACAATTGGCGCCGAGCGTTTTAGATGCCCGGAAGTTCTTTTCCAGCCATCCATGATAGGAATGGAAGCTGCAGGTATTCATGAAACCACATATAATTCCATCATGAAGTGCGATGTGGATATCAGGAAGGATCTGTATGGAAACATTGTCCTCTCTGGTGGTTCGACCATGTTTTCGGGCATTGCCGATAGAATGAGCAAGGAAATCTCTGCATTGGCTCCAAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAGAGAAAATACAGTGTCTGGATTGGTGGTTCTATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTGCACAGGAAATGCTTCTAA 1134 46.83 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFSGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34940491 34942025 - ClG42_09g0201000.10 Clacu09g2010 258318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2010 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Clacu09g2010 377 Gene3D - 140 340 - -
Clacu09g2010 377 Pfam Actin 5 377 IPR004000 -
Clacu09g2010 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Clacu09g2010 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Clacu09g2010 377 PRINTS Actin signature 51 62 IPR004000 -
Clacu09g2010 377 PRINTS Actin signature 238 254 IPR004000 -
Clacu09g2010 377 PRINTS Actin signature 63 85 IPR004000 -
Clacu09g2010 377 PRINTS Actin signature 142 161 IPR004000 -
Clacu09g2010 377 PRINTS Actin signature 28 37 IPR004000 -
Clacu09g2010 377 PRINTS Actin signature 117 130 IPR004000 -
Clacu09g2010 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Clacu09g2010 377 SMART actin_3 7 377 IPR004000 -
Clacu09g2010 377 Gene3D - 10 371 - -
Clacu09g2010 377 FunFam Actin, alpha skeletal muscle 255 330 - -
Clacu09g2010 377 FunFam Actin, muscle 182 273 - -
Clacu09g2010 377 FunFam Actin, alpha skeletal muscle 3 173 - -
Clacu09g2010 377 FunFam Actin, alpha skeletal muscle 36 73 - -
Clacu09g2010 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Clacu09g2010 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Clacu09g2010 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Clacu09g2010 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Clacu09g2010 377 FunFam Actin, alpha skeletal muscle 331 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2814 Clacu-Chr5:35444380 Clacu09g2010 Clacu-Chr9:34940491 4.60E-59 dispersed
Clacu09g2010 Clacu-Chr9:34940491 Clacu10g1739 Clacu-Chr10:30918767 1.80E-216 dispersed
Clacu07g0312 Clacu-Chr7:3510871 Clacu09g2010 Clacu-Chr9:34940491 2.10E-217 transposed
Clacu02g2076 Clacu-Chr2:34013878 Clacu09g2010 Clacu-Chr9:34940491 9.90E-215 wgd
Clacu04g0866 Clacu-Chr4:23020266 Clacu09g2010 Clacu-Chr9:34940491 4.40E-215 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2010 K10355 - csv:101220611 745.732