Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2023 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAACTCAGCTACAAGGAAGTGGCTGTGAGACAAATAATGCTCAACACCTTCCACCTCCGGCACCGCCAACTAGCGGTGGCGGCGGTAGTGGACCTGGCTCGATTAGACCAGGGTCAATGACGGATCGAGCTAGGTTGGCGAAGATACCACAACCGGAAGCCGGGTTAAAATGTCCTAGATGCGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTTTGCAAGACGTGCCGACGGTACTGGACGAGAGGTGGAGCGATGAGGAACGTACCGGTTGGAGGCGGGTGTCGGCGGTCGAGCAAGAGATCAAGCAAAGGAGGAAGCAATAGGTCAAAATCTCCAGGGGGTTCAAGCACTTCAACAAGCACAGTGTCATCAAATAGTTGCACAACAGACATAATTAGCCAACAACTGGGTCATCATCCTCCTCCTCCAACAACCCATTTGCCCTTTTTTTCTCAAAATTTACATCATCTTAGTGATTTTGGGAACCTTGGTTTAAACTTTGAAGCCCTTCAAATTCCTTCACTCCCATCATCAGCTGGAGGAGTTGAATCCTCAATTTTATCAAGTGGAATTACAGATCATCATCAATGGAAAATCCCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGATCAAGATCATCATCATCATCAACAAGGAGCCGATTTTTCAAATTACCAGCGGTTGTCAAAGCCATTATTGGAGAGTGGATTCAATACTACTACTACTACAAATCATCATCAATTGGAGAATATTAATAATAATAATAATAATAGCATGAAAATCTTGGAGGAGACACAAGGGATTAACAATTTGTCAAGAAATTTTCTTGGAATTCAACCAAATGATGATCAATTCTGGAATTCTAGTACTACAACAACAACAACACCTGGGAATATTGCATGGAGTAGTGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACTCATCTCTTGTAA 1077 41.97 MVFSSVPVFLDPPNWPSQQPTQLQGSGCETNNAQHLPPPAPPTSGGGGSGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPGGSSTSTSTVSSNSCTTDIISQQLGHHPPPPTTHLPFFSQNLHHLSDFGNLGLNFEALQIPSLPSSAGGVESSILSSGITDHHQWKIPFFANLHQQNGMYSNFMADQDHHHHQQGADFSNYQRLSKPLLESGFNTTTTTNHHQLENINNNNNNSMKILEETQGINNLSRNFLGIQPNDDQFWNSSTTTTTTPGNIAWSSDQISDHFNSTSSTTHLL 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35028519 35029765 - ClG42_09g0202300.10 Clacu09g2023 258331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2023 358 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu09g2023 358 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu09g2023 358 Pfam Dof domain, zinc finger 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu09g2023 358 MobiDBLite consensus disorder prediction 1 59 - -
Clacu09g2023 358 MobiDBLite consensus disorder prediction 134 155 - -
Clacu09g2023 358 MobiDBLite consensus disorder prediction 116 155 - -
Clacu09g2023 358 MobiDBLite consensus disorder prediction 11 33 - -
Clacu09g2023 358 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 63 276 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2023 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g2023 Clacu-Chr9:35028519 Clacu10g0834 Clacu-Chr10:15262536 5.10E-27 dispersed
Clacu10g2073 Clacu-Chr10:34128820 Clacu09g2023 Clacu-Chr9:35028519 1.50E-41 wgd
Clacu02g2084 Clacu-Chr2:34070678 Clacu09g2023 Clacu-Chr9:35028519 1.90E-39 wgd
Clacu04g0873 Clacu-Chr4:23098820 Clacu09g2023 Clacu-Chr9:35028519 3.20E-34 wgd
Clacu07g0315 Clacu-Chr7:3531525 Clacu09g2023 Clacu-Chr9:35028519 9.10E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu03g0770 . 17 179 C2C2-Dof Transcription Factor Family AT1G29160 58.0 7.7e-45 177.2
Clacu01g2452 . 6 159 C2C2-Dof Transcription Factor Family AT1G29160 52.0 7.5e-40 160.6
Clacu01g0161 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 4.2e-42 169.1
Clacu03g0770 . 17 179 C2C2-Dof Transcription Factor Family AT2G34140 55.6 2.4e-43 172.2
Clacu10g2073 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.3e-40 164.1
Clacu09g2023 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 60.4 2.0e-38 156.8
Clacu03g0162 . 68 142 C2C2-Dof Transcription Factor Family AT2G37590 89.3 5.0e-37 152.1
Clacu01g0161 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 80.8 2.6e-44 176.4
Clacu10g1511 . 145 524 C2C2-Dof Transcription Factor Family AT5G39660 53.7 2.7e-81 299.7
Clacu10g2073 . 1 133 C2C2-Dof Transcription Factor Family AT5G02460 67.3 1.3e-39 161.0
Clacu03g0162 . 69 142 C2C2-Dof Transcription Factor Family AT5G02460 90.5 5.5e-38 155.6
Clacu09g2023 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 61.4 1.3e-36 151.0
Clacu10g2073 . 54 136 C2C2-Dof Transcription Factor Family AT3G55370 81.9 1.9e-37 153.7
Clacu02g2084 . 57 205 C2C2-Dof Transcription Factor Family AT3G55370 54.0 5.6e-37 152.1
Clacu04g0873 . 11 129 C2C2-Dof Transcription Factor Family AT3G55370 64.7 1.2e-36 151.0
Clacu06g1644 . 28 324 C2C2-Dof Transcription Factor Family AT5G60850 53.6 1.7e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48392 PF02701 zf-Dof 4.50E-31 No_clan Clacu TF