Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2024 ATGGCGGGAAAGGGAGAGGGTCCGGCCATCGGTATCGATCTCGGTACCACTTACTCTTGTGTTGGAGTTTGGCAGCATGATCGTGTTGAGATTATTGCCAATGATCAAGGAAATCGAACGACGCCGTCGTATGTTGCTTTCACTGATACCGAACGACTCATCGGCGACGCTGCCAAGAACCAAGTCGCTATGAATCCTCTCAACACCGTCTTCGATGCGAAGCGGTTGATTGGAAGGAGATTCTCCGATCCCTCGGTCCAGAGCGACATGAAATTGTGGCCATTCAAGGTCATTGCCGGTCCGGGGGACAAACCTATGATTGTCGTCAATTACAAAGGCGAAGAGAAGCAATTCGCCGCTGAAGAAATCTCATCCATGGTCCTTACGAAAATGCGTGAGATAGCAGAAGCTTACCTCGGTACCTCCGTGAAGAACGCCGTCGTCACCGTTCCTGCTTACTTCAATGACTCTCAGCGTCAGGCCACCAAGGACGCCGGAGTCATTGCCGGTCTTAATGTCATGCGGATCATCAACGAGCCTACAGCTGCTGCTATTGCTTATGGACTCGATAAAAAGGCGAGCAGTGTTGGCGAGAAGAATGTTCTGATTTTTGATCTGGGTGGAGGAACGTTTGATGTCTCTCTCCTCACAATTGAGGAAGGCATTTTCGAGGTGAAGGCAACTGCCGGTGACACCCATCTCGGCGGTGAGGATTTCGACAACAGATTGGTTAACCATTTTGTTCAAGAATTCAAGAGGAAGCATAAGAAAGACATCAGTGGAAATCCAAGGGCTCTCAGGAGATTGAGGACTGCTTGTGAAAGAGCCAAGAGAACCCTCTCATCCACTGCCCAAACTACAATCGAAATCGATTCTTTGTATGAAGGAATTGATTTCTACACAACCATTACTCGAGCTAGATTCGAAGAGCTCAACATGGACCTGTTTCGAAAGTGTATGGAGCCAGTTGAGAAGTGTTTGAGAGATGCAAAGATGGACAAAAGCAGCGTCCATGATGTTGTCCTTGTTGGTGGTTCTACAAGAATTCCCAAAGTGCAGCAGCTATTGCAAGATTTCTTCAATGGCAAGGAACTTTGCAAGAGTATCAATCCTGATGAAGCAGTTGCTTATGGAGCTGCTGTCCAAGCCGCCATCTTGAGTGGTGAAGGAAACGAGAAAGTGCAAGACCTTCTTCTCTTGGATGTTACTCCTCTATCACTTGGTTTGGAAACTGCAGGAGGTGTAATGACTGTTCTAATCCCAAGGAACACGACCATTCCCACCAAGAAGGAACAAGTGTTCTCTACTTATTCGGATAACCAACCTGGTGTTCTTATTCAAGTCTACGAGGGTGAAAGGACAAGAACAAAAGATAACAATTTATTGGGCAAGTTTGAACTTTCTGGCATCCCTCCTGCTCCAAGAGGTGTTCCTCAGATCACTGTCTGCTTCGACATTGACGCCAACGGTATTCTAAACGTATCTGCAGAGGATAAAACTACAGGACAGAAGAACAAGATCACCATTACCAACGACAAAGGAAGGTTGTCCAAAGAAGAGATTGAGAAATTGGTTCAGGAAGCAGAGAAATTCAAGGCTGAGGATGAAGAACACAAGAAGAAAGTTGAATCAAAGAATGCTTTAGAAAACTATGCTTACAACATGAGGAATACCATCAAAGATGAAAAGATCGGTGGTAAACTTGCCCCAGCTGACAAGAAGAAGATCGAGGATGCAGTTGAACAGGCTATTCAGTGGCTAGATAGCAACCAGCTGGCTGAGTCGGATGAGTTTGATGACAAGATGAAGGAACTTGAGTCGATTTGCAACCCCATCATAGCCAAGATGTACCAAGGCGGTGCCGACATGGGTGGTGCGGCCATGGATGATGATGCTCCTCCTTCTGGTGGCAGTGGCGCTGGTCCTAAGATTGAAGAAGTCGATTAA 1947 46.64 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFSDPSVQSDMKLWPFKVIAGPGDKPMIVVNYKGEEKQFAAEEISSMVLTKMREIAEAYLGTSVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKLVQEAEKFKAEDEEHKKKVESKNALENYAYNMRNTIKDEKIGGKLAPADKKKIEDAVEQAIQWLDSNQLAESDEFDDKMKELESICNPIIAKMYQGGADMGGAAMDDDAPPSGGSGAGPKIEEVD 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35046522 35048947 + ClG42_09g0202400.10 Clacu09g2024 258332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2024 648 PANTHER HEAT SHOCK PROTEIN 70KDA 9 582 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
Clacu09g2024 648 FunFam Heat shock 70 kDa protein 71 126 - -
Clacu09g2024 648 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Clacu09g2024 648 FunFam Heat shock 70 kDa protein 197 260 - -
Clacu09g2024 648 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Clacu09g2024 648 FunFam Heat shock 70 kDa 391 545 - -
Clacu09g2024 648 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Clacu09g2024 648 Gene3D - 71 126 - -
Clacu09g2024 648 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 623 IPR029048 -
Clacu09g2024 648 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Clacu09g2024 648 Gene3D - 192 366 - -
Clacu09g2024 648 Gene3D - 10 384 - -
Clacu09g2024 648 FunFam Heat shock 70 kDa protein 539 648 - -
Clacu09g2024 648 FunFam Heat shock protein 70 10 196 - -
Clacu09g2024 648 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Clacu09g2024 648 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Clacu09g2024 648 Gene3D Actin; Chain A, domain 4 235 318 - -
Clacu09g2024 648 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Clacu09g2024 648 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Clacu09g2024 648 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 545 IPR029047 -
Clacu09g2024 648 FunFam Heat shock 70 kDa 235 318 - -
Clacu09g2024 648 Coils Coil 514 541 - -
Clacu09g2024 648 MobiDBLite consensus disorder prediction 621 648 - -
Clacu09g2024 648 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Clacu09g2024 648 PRINTS 70kDa heat shock protein signature 209 219 - -
Clacu09g2024 648 PRINTS 70kDa heat shock protein signature 337 353 - -
Clacu09g2024 648 PRINTS 70kDa heat shock protein signature 396 415 - -
Clacu09g2024 648 PRINTS 70kDa heat shock protein signature 8 21 - -
Clacu09g2024 648 PRINTS 70kDa heat shock protein signature 477 493 - -
Clacu09g2024 648 PRINTS 70kDa heat shock protein signature 36 48 - -
Clacu09g2024 648 PRINTS 70kDa heat shock protein signature 146 166 - -
Clacu09g2024 648 PRINTS 70kDa heat shock protein signature 369 389 - -
Clacu09g2024 648 PRINTS 70kDa heat shock protein signature 58 66 - -
Clacu09g2024 648 Gene3D - 546 619 IPR029048 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g2024 Clacu-Chr9:35046522 Clacu09g2030 Clacu-Chr9:35083885 0.00E+00 proximal
Clacu01g0180 Clacu-Chr1:1798575 Clacu09g2024 Clacu-Chr9:35046522 5.90E-231 transposed
Clacu05g0597 Clacu-Chr5:4973143 Clacu09g2024 Clacu-Chr9:35046522 5.00E-77 transposed
Clacu05g1583 Clacu-Chr5:22525136 Clacu09g2024 Clacu-Chr9:35046522 1.20E-73 transposed
Clacu06g1058 Clacu-Chr6:18392862 Clacu09g2024 Clacu-Chr9:35046522 5.00E-143 transposed
Clacu09g1007 Clacu-Chr9:9554875 Clacu09g2024 Clacu-Chr9:35046522 3.60E-141 transposed
Clacu10g0982 Clacu-Chr10:21172914 Clacu09g2024 Clacu-Chr9:35046522 1.30E-156 transposed
Clacu11g1318 Clacu-Chr11:22472966 Clacu09g2024 Clacu-Chr9:35046522 0.00E+00 transposed
Clacu11g1858 Clacu-Chr11:29703860 Clacu09g2024 Clacu-Chr9:35046522 2.80E-56 transposed
Clacu04g0875 Clacu-Chr4:23114987 Clacu09g2024 Clacu-Chr9:35046522 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2024 K03283 - csv:101211905 1229.54