Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2039 ATGGAGAAGGCAGCTGGTAGAATGTTTGAGAAGGCAAAGCCATATTTGGGAGCAATTGCATTAAGGTTTGCTTCAGCAGGAATGTCAATTATTTCAAAGGCTGCTCTAAACCAAGGAATGAACCAACTTGTTACCATTGTTTATCGTTACTCTATTGGTGCCATTGTTGTTGCTCCTTTTGCTTTTGTATTGGATAGGAAAATAAGACCAAAGATGACTCTCCCGATCTTCGCCAAGATTCTTCTCCTTGGTTTACTCGAGCCTGTAATAGCCCAGAGCTTGATTTACTCTGCTACTAAATACACAACTGCTACTTTTGCAACTGCCATGTGCAATATTCTTCCTGCCTTTGCATTTCTAATGGCTTGGATTTGTAGAATGGAGAAGGTGAACATTAGAAGATTAAGAAGCCAGGCAAAGATTTTAGGGACTTTAGTTACAGTTGGAGGAGCAATGATGATGGCTCTTATAAAAGGGCCTTTATTGAGTTTGCCTTGGACCAAACAAAATTTCAATAATCCTCATTCTTATTCCACTCTTCCAAATAACCAACAACCTCTTAAGGCTGCCATTGTTATCACCATTTCAAGTATTTGTTCCTCAGCCTTCACCATTCTTCTGGCACATACAATAAGAACATACCCAGCTGAGCTCACACTAACAACATTCATATGTTTGGCTGGAGCTGTGGAAAGTACTATTTTAGCCTTAGCATTTGAATGGGACAATCCATCTGCATGGGCTTTACATGCAGATTCCATACTCTTGGCTGCCCTCTATGGTGGTATAATGTCTTCTGGAATTGCCTATTATCTTCAAGGAGTAGTGGTGAAGTTAAAAGGACCTGTGTTTGTAACTGCATTCAATCCTCTCAGCATGGTCATAGTTGCCATAATTAGTTCATTCATATTCTCCGAGACACTGCGCTTAGGAAGGGTCATTGGAGCAGTTGTGATAATTATAGGCCTTTACTTGGTTTTGTGGGGCAAGAGCAAAGATAAACTTCCATTCAAAGTGGAGAATGACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGAATTGCCAATTTCACTCCAAGACTCAACAACCACAAACCAGCAGCTGAAGGCTTTAGATCAACAATAA 1143 38.67 MEKAAGRMFEKAKPYLGAIALRFASAGMSIISKAALNQGMNQLVTIVYRYSIGAIVVAPFAFVLDRKIRPKMTLPIFAKILLLGLLEPVIAQSLIYSATKYTTATFATAMCNILPAFAFLMAWICRMEKVNIRRLRSQAKILGTLVTVGGAMMMALIKGPLLSLPWTKQNFNNPHSYSTLPNNQQPLKAAIVITISSICSSAFTILLAHTIRTYPAELTLTTFICLAGAVESTILALAFEWDNPSAWALHADSILLAALYGGIMSSGIAYYLQGVVVKLKGPVFVTAFNPLSMVIVAIISSFIFSETLRLGRVIGAVVIIIGLYLVLWGKSKDKLPFKVENDNNNNNNNNNNNNNNNNELPISLQDSTTTNQQLKALDQQ 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35188666 35191894 + ClG42_09g0203900.10 Clacu09g2039 258347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2039 380 MobiDBLite consensus disorder prediction 340 365 - -
Clacu09g2039 380 PANTHER WAT1-RELATED PROTEIN 19 346 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu09g2039 380 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
Clacu09g2039 380 SUPERFAMILY Multidrug resistance efflux transporter EmrE 256 332 - -
Clacu09g2039 380 MobiDBLite consensus disorder prediction 339 365 - -
Clacu09g2039 380 Pfam EamA-like transporter family 15 153 IPR000620 GO:0016020(InterPro)
Clacu09g2039 380 Pfam EamA-like transporter family 188 327 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g2039 Clacu-Chr9:35188666 Clacu09g2041 Clacu-Chr9:35246459 5.40E-104 dispersed
Clacu09g2039 Clacu-Chr9:35188666 Clacu09g2040 Clacu-Chr9:35219112 2.40E-91 tandem
Clacu04g0890 Clacu-Chr4:23251766 Clacu09g2039 Clacu-Chr9:35188666 4.30E-101 wgd
Clacu07g0304 Clacu-Chr7:3379851 Clacu09g2039 Clacu-Chr9:35188666 1.20E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2039 - - - 0.0