Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2041 ATGGAGCATCCCGCCGGAATGTTGAATCAGGCAAAGCCATTTATTGCAGTGATTCTTCAGCAATTCATCTCTGCCGGAATGGTCATCATTTCCAAGTTGGCTCTCAACCAAGGACTCAACCAGCACGTTTTAGTCGTCTACCGCTACACCATTGCTACCATTGTCGTCGCTCCGTTCGCTTTCATCTTCGAGAGGAAAGTGAGACCCAAGATGACTTGGTCCATTTTTGGGAAGGTTGTGTTACTGGGACTATTGGAGCCTGCACTAGACCAAAACTTGTATTATACAGGCATGAAGTACACTACAGCAACCTTTGCATCCGCTATGACTAATATGGTCCCTGGCCTCGTCTTCCTCATGGCTTGGCTTGTTCGGCTTGAGAAGGTTGACGTAAGGCAGGTGTCGAGCCAGGCGAAGATATTAGGAACAGTGGTGGCAGTGGGAGGGGCGATGATAATGACTCTGGTAAGAGGACCAATCTTGAATCTGCCATGGACAAATCACAACCTCCATGACCATTCTGCAGCTGCAACTAACCAGCAAGATCTTCTCAAGGGTTCTCTCATGATCACTATTGGTTGTATTCTTTGGTCTGTTTTCAATGTTCTTCAGGCAATTACAGTAAAAGTATACCCAGCACAACTCTCCTTAACAGCTTTGATATGCTTCACCGGCGCCATACAAGCCTCAGTAATAGCTTTCGCAATGGAAGGGCACAAACCTGCGGCCTGGTCATTACATTTAGATTCAACCCTCTTAGCTCCTTTGTATAGTGGAATCATGTCTTCAGGGGTTTCATATACTATCCAAGCAGCAGTAATGAAAAGGAAAGGGCCAGTTTTTGCAAGTACATTTAGTCCCCTGAGCATGATTATTGTTGCAATCATTAGTTCATTCGCATTATCCGAGATATTATACTTTGGAAGGGTTATTGGAGCAGCTGTAATTATTACAGGCCTTTATTTGGTTCTGTGGGGTAAAATCAAGGATCACGCTCTATACAAATCAGATAGTGAGAAGATGGCCCCACCAGATCAGAAACTGACTGCCATAACTGACAAACCTAAGACTTCAGATAAAGAACTAGGAGTTGATCTTGCTAGGATAAAAACAGTGGATGATTCTGTTTGA 1131 44.3 MEHPAGMLNQAKPFIAVILQQFISAGMVIISKLALNQGLNQHVLVVYRYTIATIVVAPFAFIFERKVRPKMTWSIFGKVVLLGLLEPALDQNLYYTGMKYTTATFASAMTNMVPGLVFLMAWLVRLEKVDVRQVSSQAKILGTVVAVGGAMIMTLVRGPILNLPWTNHNLHDHSAAATNQQDLLKGSLMITIGCILWSVFNVLQAITVKVYPAQLSLTALICFTGAIQASVIAFAMEGHKPAAWSLHLDSTLLAPLYSGIMSSGVSYTIQAAVMKRKGPVFASTFSPLSMIIVAIISSFALSEILYFGRVIGAAVIITGLYLVLWGKIKDHALYKSDSEKMAPPDQKLTAITDKPKTSDKELGVDLARIKTVDDSV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35246459 35248781 + ClG42_09g0204100.10 Clacu09g2041 258349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2041 376 PANTHER WAT1-RELATED PROTEIN 15 338 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu09g2041 376 Pfam EamA-like transporter family 15 152 IPR000620 GO:0016020(InterPro)
Clacu09g2041 376 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020(InterPro)
Clacu09g2041 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 328 - -
Clacu09g2041 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0304 Clacu-Chr7:3379851 Clacu09g2041 Clacu-Chr9:35246459 1.30E-107 dispersed
Clacu07g0305 Clacu-Chr7:3417540 Clacu09g2041 Clacu-Chr9:35246459 1.10E-109 dispersed
Clacu09g2039 Clacu-Chr9:35188666 Clacu09g2041 Clacu-Chr9:35246459 5.40E-104 dispersed
Clacu09g2041 Clacu-Chr9:35246459 Clacu11g1749 Clacu-Chr11:28669297 1.20E-84 dispersed
Clacu09g2040 Clacu-Chr9:35219112 Clacu09g2041 Clacu-Chr9:35246459 5.50E-90 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2041 - - - 0.0