Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2043 ATGCCAATCCATAAATTTTCAATCGGATCACCTGGAGAGGCGAGCCAACCGGACGCGATCAAGGCCGCATTTGCCGAATTCTTCTCCATGATCATCTTTGTTTTCGCCGGACAAGGATCCGGATTGGCTTTTGATAAGTTAACGGACGGTGGATCTGCGACGCCGTCGGGGCTGATAGTGGCATCTCTGGCTCATGCTTTTGCGTTATTTGTGGCGGTCTCCGTCGGAGCTAATATCTCCGGTGGCCATGTAAATCCGGCAGTTACATTTGGTGCGCTCATTGGTGGAAACATATCGTTCTTTAGAAGTATAATGTATTGGTTCGCTCAATTGCTTGGTTCTGTTGTTGCGTGCTTCCTTCTCAAGTTTGCGACTGGTGGAAAGGTAACACCAGCATTTGCCTTATCATCAGGAGTTTCTGTGTGGAATGCATTTATATTTGAGGCAGTGATGACTTTTGGATTAGTATATACAGTGTATGCAACAGCAGTAGATCCAAAGAGGGAGAATTTGGGCATAATTGCCCCAATTTCTATTGGTTTCATTGTTGGTGCAAACATTTTGGTTGGTGGTGCTTTTGATGGCGCTTCCATGAACCCTGCAGTCTCCTTTGGCCCTGCTGTAATCACCTGGTCATGGACCCATCACTGGGTCTACTGGCTTGGTCCAATGGCTGGTGCAGCCATTGCTACCATTGTCTATGACACTCTCTTTATCTCAGACTCCATGCATGATCCTCTTACTCAGTATAATGATTTCTAG 762 46.46 MPIHKFSIGSPGEASQPDAIKAAFAEFFSMIIFVFAGQGSGLAFDKLTDGGSATPSGLIVASLAHAFALFVAVSVGANISGGHVNPAVTFGALIGGNISFFRSIMYWFAQLLGSVVACFLLKFATGGKVTPAFALSSGVSVWNAFIFEAVMTFGLVYTVYATAVDPKRENLGIIAPISIGFIVGANILVGGAFDGASMNPAVSFGPAVITWSWTHHWVYWLGPMAGAAIATIVYDTLFISDSMHDPLTQYNDF 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35263369 35266157 - ClG42_09g0204300.10 Clacu09g2043 258351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2043 253 CDD MIP 21 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g2043 253 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g2043 253 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g2043 253 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g2043 253 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g2043 253 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g2043 253 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g2043 253 Gene3D Glycerol uptake facilitator protein. 5 251 IPR023271 -
Clacu09g2043 253 SUPERFAMILY Aquaporin-like 16 241 IPR023271 -
Clacu09g2043 253 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Clacu09g2043 253 FunFam Probable aquaporin TIP1-1 4 252 - -
Clacu09g2043 253 PANTHER AQUAPORIN-8 6 244 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Clacu09g2043 253 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g2043 Clacu-Chr9:35263369 Clacu10g1967 Clacu-Chr10:33205024 1.90E-84 dispersed
Clacu09g2043 Clacu-Chr9:35263369 Clacu04g0996 Clacu-Chr4:24122564 4.70E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2043 K09873 - csv:101222909 475.707