Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2069 ATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCCGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCAGAGCCAGCTTCATTAGATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTAGCAGATGCAGAGAATGAACAAAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCCGAGGCGGCTGTTGCAGCCGCTCAGGCTGCGGTGGAGGTCGTTCGGCTCACTACCATCCCTCGGTACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGTTATATGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGCATGCAGACTCTTGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGGCAACTCCAACAAAAACACGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGAGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAGACTAAGAGCACGGTCGATTATCACGATCGTGGCTCCGTCAAGAGCGCGATCAGCCATGCAACCTCGATCGGAGACATTGCCAAAGCTTATGCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGGACTCCAACGAGCCAAAAAACGAGCCGAGCTCCGAGTCACCAATCACCGGCGACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATCGGCTGGGGCGGAGACGCTGATTCCAGAAGCGCATTGAGCGTCAAATCGGAGAGGTACCGGCGACACAGCATCGCTGGATCATCGGTGAGGGATGATGAGAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCATCCACAGAAGCAGCCAGGGCTAGGTCCCGATTGTCGAGTCCAATGGGAACGGAGAAGACGGCGGCGTTTCCAGAGAAGGGACCGGCGAGTATCGGCGCAAAGAAACGGCTGTCGTTCCCCGCCTCGCCGACAAATTCGAGGAGGCACTCTGGTCCGCCGAAAATAGACGCTAGTCCGATCAAGAATGTTGCAGAGAGAGATTTTACCGGCGAGAGCAGATAG 1458 50.62 MGKRGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVASAEPASLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAVEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANNEWNDSTKSKEQIEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPRWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIGDIAKAYARRDLNLDIKPFPRTPTSQKTSRAPSHQSPATPTKAHSSLSAGRKLKPDSPRGIGWGGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAAFPEKGPASIGAKKRLSFPASPTNSRRHSGPPKIDASPIKNVAERDFTGESR 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35494288 35497545 - ClG42_09g0206900.10 Clacu09g2069 258377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2069 485 MobiDBLite consensus disorder prediction 324 351 - -
Clacu09g2069 485 MobiDBLite consensus disorder prediction 395 411 - -
Clacu09g2069 485 Coils Coil 177 197 - -
Clacu09g2069 485 PANTHER IQ-DOMAIN 5-RELATED 6 439 - -
Clacu09g2069 485 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
Clacu09g2069 485 ProSiteProfiles IQ motif profile. 114 142 - -
Clacu09g2069 485 Gene3D iswi atpase 111 149 - -
Clacu09g2069 485 MobiDBLite consensus disorder prediction 1 35 - -
Clacu09g2069 485 MobiDBLite consensus disorder prediction 377 394 - -
Clacu09g2069 485 MobiDBLite consensus disorder prediction 320 485 - -
Clacu09g2069 485 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2069 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0041 Clacu-Chr1:380136 Clacu09g2069 Clacu-Chr9:35494288 5.60E-26 dispersed
Clacu03g1192 Clacu-Chr3:23178893 Clacu09g2069 Clacu-Chr9:35494288 2.90E-33 dispersed
Clacu04g0929 Clacu-Chr4:23563185 Clacu09g2069 Clacu-Chr9:35494288 5.70E-106 dispersed
Clacu05g1057 Clacu-Chr5:9475179 Clacu09g2069 Clacu-Chr9:35494288 1.40E-19 dispersed
Clacu05g1958 Clacu-Chr5:28721197 Clacu09g2069 Clacu-Chr9:35494288 7.40E-28 dispersed
Clacu05g2280 Clacu-Chr5:31155807 Clacu09g2069 Clacu-Chr9:35494288 3.40E-110 dispersed
Clacu06g0117 Clacu-Chr6:1258933 Clacu09g2069 Clacu-Chr9:35494288 7.70E-26 dispersed
Clacu06g0630 Clacu-Chr6:7212953 Clacu09g2069 Clacu-Chr9:35494288 7.60E-16 dispersed
Clacu07g0989 Clacu-Chr7:24327790 Clacu09g2069 Clacu-Chr9:35494288 1.50E-25 dispersed
Clacu07g1527 Clacu-Chr7:29894899 Clacu09g2069 Clacu-Chr9:35494288 4.80E-21 dispersed
Clacu09g0028 Clacu-Chr9:358891 Clacu09g2069 Clacu-Chr9:35494288 6.80E-10 dispersed
Clacu09g0077 Clacu-Chr9:742456 Clacu09g2069 Clacu-Chr9:35494288 1.30E-21 dispersed
Clacu01g0760 Clacu-Chr1:8237551 Clacu09g2069 Clacu-Chr9:35494288 7.70E-28 transposed
Clacu01g2430 Clacu-Chr1:34862051 Clacu09g2069 Clacu-Chr9:35494288 1.10E-33 transposed
Clacu02g0249 Clacu-Chr2:2319190 Clacu09g2069 Clacu-Chr9:35494288 8.40E-15 transposed
Clacu05g0018 Clacu-Chr5:419461 Clacu09g2069 Clacu-Chr9:35494288 4.00E-31 transposed
Clacu06g0268 Clacu-Chr6:3253824 Clacu09g2069 Clacu-Chr9:35494288 7.00E-30 transposed
Clacu10g1553 Clacu-Chr10:28798559 Clacu09g2069 Clacu-Chr9:35494288 6.30E-20 transposed
Clacu10g2021 Clacu-Chr10:33660801 Clacu09g2069 Clacu-Chr9:35494288 6.50E-76 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu09g2069 . 1 479 IQD Protein Family AT3G52290 53.8 1.4e-103 373.6
Clacu05g2280 . 1766 1975 IQD Protein Family AT2G26410 51.2 2.0e-43 174.1
Clacu03g1192 . 36 443 IQD Protein Family AT3G22190 57.8 3.2e-97 352.4
Clacu05g1958 . 1 438 IQD Protein Family AT2G26180 61.6 3.9e-119 425.2
Clacu01g2430 . 25 298 IQD Protein Family AT2G33990 52.5 2.5e-63 239.2
Clacu07g0989 . 109 292 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Clacu01g2430 . 25 246 IQD Protein Family AT3G15050 50.9 1.9e-55 213.0
Clacu07g0989 . 112 285 IQD Protein Family AT3G15050 62.1 3.5e-54 208.8
Clacu01g0760 . 111 463 IQD Protein Family AT5G13460 50.4 8.1e-75 278.1
Clacu06g0268 . 1 509 IQD Protein Family AT4G00820 51.4 7.4e-115 411.4
Clacu06g0268 . 1 509 IQD Protein Family AT1G01110 50.1 2.4e-110 396.4
Clacu09g0028 . 1 399 IQD Protein Family AT3G16490 50.5 1.2e-66 250.8
Clacu03g1648 . 1 391 IQD Protein Family AT3G16490 50.2 5.1e-65 245.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40