Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2081 ATGACCAATCAGTTGAGAAGTAGTGTAAACCGAAGGCGAGACTTCACAGACAAGTATAAGTGGAAGAAGCAAAGGATAATCCAGTCTGCTGAGGAGGAGATTGAATCAAAGTTTGGATTCAATCTCTTCTCTGAAGGCGACAAGAGACTTGGATGGTTGCTCACTTTTACTCCTTCATCTTGTAAGGATGAGGATACTGAAAAAGTCTACAGTTGTATTGATCTTTATTTTGTAACACAGGATGGCAGCAGTTTCAAATCGAAATATAAGTTTCGTCCTTATTTTTATGCAGCCACAAAGGATAAAATGGAAACTGATGTGGAGGATTGTTTGAGACGACGTTATAAAGGTCAAATAGCTGATATTGAGATTTTAGAAAAAGAGGACCTTGATCTTTCGAATCATTTGTCGGGATTGCACAAGGCATATTTAAAGCTATCCTTTGACGCTGTTCAAGAATTGATGAATGTAAAGAGTGAATTATTGCATGTTGTTGAAAGCAATAGGGAGAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGAGAACAGAGGTCTCAAGATTTTCTAGAATGTATTGTTGATCTTCGAGAGTACGATGTTCCTTACCACGTTCGCTTTGCTATTGATCACGATTTGCGGTGTGGACAGTGGTATGATGTCAGTGTATCAAGCACTGGTATTACTCTTGAGAAGAGAAATGATCTCCTGCAACGTGCTGAAGTTCGGATATGTGCATTCGATCTTGAGACCACAAAACTACCCCTGAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAATACACTCCAAAACCAGAATATGAAGGGTTCTTCAAAGTGAGCAATGTGAAAAATGAGTTAGAGCTTCTCAAACTTTGGTTTGCCCATATGCGAGAGCTGAAACCTGGTATCTACGTCACCTATAACGGTGACTATTTTGACTGGCCATTTCTTGAAAGCAGAACAGCAAATCATGGGCTTAAAATGAGTGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGAGAATGTCGTTCTAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAAGGTAGCCATGGTTTGAAGGCTGTCACAAAAGCGAAACTGGGGTACGATCCTCTTGAAGTGAATCCAGAGGATATGGTGCGGTTTGCAAAGGAAAAACCTCAGATGATGGCTTCCTATTCCGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTCATCCTTTCATTTTTTCTCTAGCAACTATCATTCCAATGTCACCCGATGAGGTGTTGCGCAAAGGAAGTGGGACGCTTTGTGAAATGCTTTTAATGGTTCAGGCTTACAAGGCTAATGTCGTGTGTCCTAACAAACATCAATCAGATCCAGAAAAGTTCCATAACAATCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGTCTAGAGAGTGGTGTATTTAGATCTGACCTTCCTACCAGATTTAGACTTGATTCATCTGCTTATGATCAATTGATAAACAATCTAGATCGAGATTTGCAGTATGCCATTCAAGTAGAAGGAAAAATGGACTTGGAATCGGTGTCAAACTATAGTGATGTGAAGAATGCTATTATGGAAAAGCTTATTCGATTGCGGGATGAGCCTATGCGTGAAGAGTGCCCTCTGATCTATCACCTTGATGTAGCTGCAATGTATCCTAACATCATTTTAACAAATAGGCTTCAGCCGCCATCAGTAGTAACAGATGAGGTTTGCACTGCTTGTGATTTCAACCGTCCTGGAAAAACTTGTCTACGAAAACTTAAATGGGTTTGGCGTGGAGAGGTATTCATGGCTAAAAGAAGCGACTATTATCATCTGAAGAGGCAAATTGAGTCTGAGTTTGTCAATAGTGGTAATGTTCGAGTGTCAAAACAATTTCTTGAACTTCCGAAGTTGGAGCAACAAGCAAAACTGAAAGAGCGTTTAAAGAAATACTGTCAGAAGGCTTACAAACGGGTACTTGATCCAGTCACTGAAGTTCAAGAAGCAGGGATCTGTATGAGGGAAAACTCCTTCTATATCGACACTGTTCGTAGTTTTCGAGATAGAAGATATGAATACAAAGGGCTCAATAAAGTTTGGAAAGGGAAACTATCAGAAGCTAAAGCAAGTGGAAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTGGTTCTGTATGATTCTTTACAACTTGCTCATAAATGTATCCTCAACTCCTTTTATGGATATGTGATGCGAAAGGGTGCTCGTTGGTATTCAATGGAAATGGCTGGGGTTGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCACCTGCTAATTAAGAAAATTGGAAAACCACTAGAGTTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCATTCCCGGAGAACTTTACCTTTGAAACAAAAGACTTGAAGAAGTTGACAATTTCATATCCATGTGTTATGCTTAATGTTGATGTGGCAAAGAACAACACAAATGATCAGTACCAAACACTTGTAGATCCTGTGAGGAAAATATATGAAACGCGAAGCGAATGCTCAATTGAATTTGAAGTCGATGGACCGTACAAGGCAATGATCCTTCCTGCCTCCAAGGAAGAAGGCATTTTGATCAAGAAGAGATATGCTGTCTTCAATGATGATGGAACCCTTGCAGAGCTGAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCTGAGCTTTTTGACAAGTTTCTTCATGGTTCCACCTTAGAGGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGCTGGCTTGATCTTCTAGATAGTCAAGGAAAAGATATTGCAGATAGTGAGTTGCTTGATTATATATCTGAATCTAGTACCATGAGCAAGTCTTTGGCAGACTATGGAGAGCAAAAGTCTTGTGCTGTTACCACTGCAAAACGTCTTGCTGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTTCGATGTCAATACATAGTTGCATGCGAACCCAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTTGCTATATTTGAGACTGATCAAGAGATAATGAAATTTTATGTACGCAAATGGTGCAAAATTTCATCAGAAGTTGGCATTCGATCCATCATCGACTGGTCCTACTACAAACAACGCCTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCTGCCATGCAAAAGGTTTCAAATCCTGTCCCTAGGGTGGTCCATCCTGATTGGTTACATAAGAAAGTCCGTGAGAAGGATGATAAATTTTGCCAACCGAAAATAGTCGATATGTTTGCCTCAAGCAGAGGTAAATATTCAGAAAACAATGGTGGTGCTAGCAGCAGCAAACATGTGATGAACAGTGAAAATTCTGATGATATAGAAGACTTTCAAAAGAAAACTAGTGCTACAAATGTCCCCAAACCAGTTGTTCGAAGTTACAATGTTACAGCCATGAAACATTCAGTTACAAAAGATAGCCAAGTAGATTCCATGATGCAAGAAAAGTGTAAGGGTGTAGGATGCGATCCTTCTTCACCATTACATTTCAAAGACATTGATAGAAATGTGGATTACCACGGATGGCTTGAAATGAAGAAACGAAAGTGGAGGAATATTTTGGACAAGAGGAAGAAACAAAGATTGGTAGATTTGAGGACTCCACTTCCTGCTAACGGTGTTCCATTGGAGTTGAATTACGCTATGAACAATAAAGAGGCTCTTGGAATAACAGGCGTTGGTTTGTATTTTAAGAGGCACGAAAAATCTATAACACATTGTCATTGGCAGATTTTACAGCTTGTTCATAGTTCACAGAGTGGCCAATATTTTGCTTGGGCTGTTGTTGAAGGAGTTATGCTAAAGATTCCTATTACTGTTCCTAGAGTATTTTACATCAATTCTAAATTACCCATTACAGAAGGATTTGTTGGTAGGCGTGTTAACAAAACCCTTCCGCATGGAACGCACATCTATAACCTGTATGAGGTTGTGACTGATGAAGGTGAATTTAGGACACAGAGTAATAAACTTGCTGCCCTCCTTGCAGATCCAGAAGTTGAGGGCATCTATGAAAGCAAGGTATCATTGGAGTTCAAGTCCATCCTCCAGATTGGTTGTGTCTGTAAAGTTGATAAAACTGCTAAAAAACGAAACATTCAAGACGGGTGGAGTCTGGATGAACTGCAAATGAAAACTACAACAGAATGCAGTTATCTCGAAAAGTTAACCTCTTTCTTCTATGTGTATAATAGCATTTCTGAAGGAGGAGATATCTACATTACCTATTTTCCTGCCACAAAATTCATACTTGTGGTGGTGGTTACTTCTTACCGAAACAAAGACTTGTCATCAAACTTTCTCGAAAGGAAATTTTGTGAAGCTTGTCAAATGCTCTCTGGTCAATCACAACCCCCTAAGAGTGGTATAGCTTACAAGGTTGACTATGTTGTAAACATCAAAGAAGCTGAAGTGATTTTGCAAAAGTCAATAACAGAATACAGGAGCACAAACCTTGGACCTACTGTTGCTATAATTGAGTCCCCAAATGTGCAGCTTCTGAAGTCAGTTGTGAAAGTATTAGACGATTTTCCATGCTTGAACATCCCTTATGATGCTCATCATAGTCAATATCAGTTTCTTGGTTGGCAACAAAAAGCTGCTGAGATTGGAATGCGACAGTGTGCTAATTCATCCCGATGGTTGAATAATAGAATCTCTCTTGCAAGATATGCCCATGTACCTTTGGGAAATATTGAACCTGATTGGAAAATTTTTACAGCAGATATTTTCTTTTCAAGGGCATTACATGATCAACAACAGGTCCTTTGGATATCAGATGACGGTGTTCCAGATATAGGAGGCAATAATTTCGAAGACGTTTGTTTAGTCGATGAGGTTCAACAGCCTATCCGGAATTGCTCTGGTGCATACAGAAAATTTTCTGTGGAGCTAAAGATCCATCATTTGGCTGTGAATGCGCTGCTGAAGAGCAACCAAGTGAATGAAATGGAAGGAGGTGGCTTTGATGAGGCTGAATCATATGCCCCAGCATTTCCTGTCCTGAAACAATTGATTCAAAGATGTCTTGCAGATGTAGCTACATCTGGAAATGTTTATGCTGATGAAATTTTGTTGCATCTGTACCGTTGGATTTGCAGCCCCCAATCAAGGCTTCATGACCCAGCTCTTCATCGCTTGCTTCACAAGGCAATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGCACTACGCAAATTAGGTGCCACCATTATTTTTGCAAACTTCTCAAAAGTTGTCATAGACACGGGAAAGTCTGATCTTTCTGCTGCTAAGGCATACTGTGATAGCTTGCTGAAAACACTGCAAACAAGGGACCTGTTTGAGTGGATTGAGCTGATACCAGTACAGTTCTGGCACTCCCTGTTATTTATGGATCAGTACAATTATGGTGGAATTTCAGCAAAAGATAATGAAATTACAGATGCTAAATCCCAAGTTAAAATATTGTCCAACTGGAAGATTGCTGAATATCTACCTAAGAAGATTCAGGATTGTTTTATTACGATCATTTCTCAATTTATATACATTCCATGGATATTTGCAACCAAACAAGCTGTTGCAAGAGTGTCGTTGCAGCAGGCCGACACGTGTACCCCATCTTTTGAATCACAAGTGACAGAACATCTCAAAGAGCAGTTGAGTTCTTACTTCAGCAACCATCTGTTTGGGATTGTTGATGATATTTTACATAAACAACCTTCTGATAGTGTCCATAAAGAAGATGCTGCATTGAAATTCATTAATTACGTTTGTGCTGCTTTGGAACTTGACCAAAATGTTCGGGATGATGTTCGGAAAATGAAGAAGAATTTACTGAAGTATATGCACGTGAAAGAGTTTGCACCAGAAGCTCAGTTTTCTTATCCATGCACTTCCTTCATCTTACCCAATGTCTTTTGCAGCTATTGCAATGATTGTAGAGATTTGGACTTGTGCCGTGACTCAGATTTACAAGCACAAGAATGGCGGTGTGGTGTGGCAGAATGTGGACAACCATATAACCAAGAATTGATTGAGAATGCTCTTATTCAAATTGTGATGCAAAGAGAGCGTGCATATCACGTGCAGGATTTGGTTTGTGGTAGGTGCAAACAGGTCAAAGCTGCTCATTTGTGGGAACAATGTGCCTGTGCTGGCACATTTCAATGCAAAGAAGATGCCAAGGAGTTTTTGAGCAGCATGAGGATTCTCTTGGAGTATGCGGACGTGGAACTGAGTGGGGATGGGACACATGCAAGGGGTGCTCGGAGTGTACCGGTGGCCATGGGGCGTGCATGGGAGACCAGCTGTGCGTGTTGGGTGTGA 6546 40.21 MTNQLRSSVNRRRDFTDKYKWKKQRIIQSAEEEIESKFGFNLFSEGDKRLGWLLTFTPSSCKDEDTEKVYSCIDLYFVTQDGSSFKSKYKFRPYFYAATKDKMETDVEDCLRRRYKGQIADIEILEKEDLDLSNHLSGLHKAYLKLSFDAVQELMNVKSELLHVVESNREKSDAAEAYDSILFGKREQRSQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTGITLEKRNDLLQRAEVRICAFDLETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGFFKVSNVKNELELLKLWFAHMRELKPGIYVTYNGDYFDWPFLESRTANHGLKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVVCPNKHQSDPEKFHNNRLLESETYIGGHVECLESGVFRSDLPTRFRLDSSAYDQLINNLDRDLQYAIQVEGKMDLESVSNYSDVKNAIMEKLIRLRDEPMREECPLIYHLDVAAMYPNIILTNRLQPPSVVTDEVCTACDFNRPGKTCLRKLKWVWRGEVFMAKRSDYYHLKRQIESEFVNSGNVRVSKQFLELPKLEQQAKLKERLKKYCQKAYKRVLDPVTEVQEAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNAHLLIKKIGKPLELDTDGIWCALPGSFPENFTFETKDLKKLTISYPCVMLNVDVAKNNTNDQYQTLVDPVRKIYETRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDSQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDQEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLHKKVREKDDKFCQPKIVDMFASSRGKYSENNGGASSSKHVMNSENSDDIEDFQKKTSATNVPKPVVRSYNVTAMKHSVTKDSQVDSMMQEKCKGVGCDPSSPLHFKDIDRNVDYHGWLEMKKRKWRNILDKRKKQRLVDLRTPLPANGVPLELNYAMNNKEALGITGVGLYFKRHEKSITHCHWQILQLVHSSQSGQYFAWAVVEGVMLKIPITVPRVFYINSKLPITEGFVGRRVNKTLPHGTHIYNLYEVVTDEGEFRTQSNKLAALLADPEVEGIYESKVSLEFKSILQIGCVCKVDKTAKKRNIQDGWSLDELQMKTTTECSYLEKLTSFFYVYNSISEGGDIYITYFPATKFILVVVVTSYRNKDLSSNFLERKFCEACQMLSGQSQPPKSGIAYKVDYVVNIKEAEVILQKSITEYRSTNLGPTVAIIESPNVQLLKSVVKVLDDFPCLNIPYDAHHSQYQFLGWQQKAAEIGMRQCANSSRWLNNRISLARYAHVPLGNIEPDWKIFTADIFFSRALHDQQQVLWISDDGVPDIGGNNFEDVCLVDEVQQPIRNCSGAYRKFSVELKIHHLAVNALLKSNQVNEMEGGGFDEAESYAPAFPVLKQLIQRCLADVATSGNVYADEILLHLYRWICSPQSRLHDPALHRLLHKAMQKVFALLLAALRKLGATIIFANFSKVVIDTGKSDLSAAKAYCDSLLKTLQTRDLFEWIELIPVQFWHSLLFMDQYNYGGISAKDNEITDAKSQVKILSNWKIAEYLPKKIQDCFITIISQFIYIPWIFATKQAVARVSLQQADTCTPSFESQVTEHLKEQLSSYFSNHLFGIVDDILHKQPSDSVHKEDAALKFINYVCAALELDQNVRDDVRKMKKNLLKYMHVKEFAPEAQFSYPCTSFILPNVFCSYCNDCRDLDLCRDSDLQAQEWRCGVAECGQPYNQELIENALIQIVMQRERAYHVQDLVCGRCKQVKAAHLWEQCACAGTFQCKEDAKEFLSSMRILLEYADVELSGDGTHARGARSVPVAMGRAWETSCACWV 2181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35587941 35609321 - ClG42_09g0208100.10 Clacu09g2081 258389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2081 2181 Gene3D Palm domain of DNA polymerase 589 940 IPR023211 -
Clacu09g2081 2181 SMART polmehr3 244 846 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Clacu09g2081 2181 SUPERFAMILY DNA/RNA polymerases 491 1118 IPR043502 -
Clacu09g2081 2181 SMART DUF1744_2 1514 1879 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Clacu09g2081 2181 Gene3D - 944 1128 IPR042087 -
Clacu09g2081 2181 FunFam DNA polymerase epsilon catalytic subunit 760 940 - -
Clacu09g2081 2181 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 10 2137 IPR029703 GO:0000278(PANTHER)|GO:0003677(InterPro)|GO:0003677(PANTHER)|GO:0003887(InterPro)|GO:0003887(PANTHER)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0045004(PANTHER)
Clacu09g2081 2181 Pfam DNA polymerase epsilon catalytic subunit A, thumb domain 949 1124 - -
Clacu09g2081 2181 Gene3D - 243 473 IPR036397 GO:0003676(InterPro)
Clacu09g2081 2181 CDD DNA_polB_epsilon_exo 245 449 - -
Clacu09g2081 2181 Gene3D DNA Polymerase, chain B, domain 1 61 239 - -
Clacu09g2081 2181 Pfam DNA polymerase family B, exonuclease domain 199 405 IPR006133 -
Clacu09g2081 2181 Pfam Domain of unknown function (DUF1744) 1530 1879 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Clacu09g2081 2181 SUPERFAMILY Ribonuclease H-like 64 472 IPR012337 -
Clacu09g2081 2181 CDD POLBc_epsilon 508 1125 - -
Clacu09g2081 2181 FunFam DNA polymerase epsilon catalytic subunit 61 232 - -
Clacu09g2081 2181 Pfam Zinc finger domain of DNA polymerase-epsilon 2102 2148 IPR054475 -
Clacu09g2081 2181 FunFam DNA polymerase epsilon catalytic subunit 245 473 - -
Clacu09g2081 2181 FunFam DNA polymerase epsilon catalytic subunit 944 1128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2254 Clacu-Chr2:35642079 Clacu09g2081 Clacu-Chr9:35587941 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2081 K02324 - csv:101208568 3614.31