Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2091 ATGTCGATCTCTTCTCCCTCCGACTCCTTCATTGACTCTCACTTACTCTGTGACGAGGACTCCTCCGGTATTTTGTCCGGAGAGTCGCCGGAGTACTCCTCTGACCTTGAATCCCCGGCCAGCAGTGAGGATTCTATCGCTACTTTCATAGAGGACGAGAGACACTTCGTTCCTGGAATTGATTACTTGTCGCGCTTTCAGTCTCAATCGCTCGATTCTTCCGCAAGAGCCGACTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCACTCACTGCATACCTTTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGAAACAAATGGGTGGCCATTGCAGCTTCTTTCAGTGGCTTGTTTATCACTTGCAGCTAAAATGGAGGAACCCATTGTTCCTTCATTCGTGGATCTGCAGATTGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTGACAACTTTGAATTGGCGGCTCCGATCCGTAACACCTTTCAGCTTTATCGGATTCTTCGCCTACAAAGTTGATCCCACCGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACGGAAATTATTCTCTCCAATATTCGAGACGCTACCTTTCTTGAGTACTGGCCTTCTTGCATTGCTGCCGCTGCCTTACTCTGTGCGGCAAATGAAATACCCAATTTGACCCTCTTGGATCCTGAACAGGCCGAGTCTTGGTGCAATGGACTCAGCAAAGATAAAATTGTCGGGTGTTATCGGCTAATGCAACCGTTAACAGCGGAGAGTCATCGGAGGAAGCCGCCGAAAGTGATACCACAGCTCCGAGTCAGAATCCGAGCCGGGTTGAGATATAGTGACTCGTCATCCTCCTCCTCCTCATCAAGGTTACCTTTTAAAAGAAGGAAGTTAAATAATTGCTTGTGGGTAGAAGATGACAAAGAAAATTCCAAGTTTAGAGCAGACGAATAA 1008 46.63 MSISSPSDSFIDSHLLCDEDSSGILSGESPEYSSDLESPASSEDSIATFIEDERHFVPGIDYLSRFQSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPIVPSFVDLQIEGAKYIFEPRTIRRMELLVLTTLNWRLRSVTPFSFIGFFAYKVDPTGTFSSFLNSRSTEIILSNIRDATFLEYWPSCIAAAALLCAANEIPNLTLLDPEQAESWCNGLSKDKIVGCYRLMQPLTAESHRRKPPKVIPQLRVRIRAGLRYSDSSSSSSSSRLPFKRRKLNNCLWVEDDKENSKFRADE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35717818 35719885 - ClG42_09g0209100.10 Clacu09g2091 258399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2091 335 ProSitePatterns Cyclins signature. 76 107 IPR048258 -
Clacu09g2091 335 SMART cyclin_7 81 169 IPR013763 -
Clacu09g2091 335 SUPERFAMILY Cyclin-like 39 175 IPR036915 -
Clacu09g2091 335 CDD CYCLIN_AtCycD-like_rpt2 178 268 - -
Clacu09g2091 335 Pfam Cyclin, C-terminal domain 178 279 IPR004367 -
Clacu09g2091 335 CDD CYCLIN_AtCycD-like_rpt1 75 173 - -
Clacu09g2091 335 SUPERFAMILY Cyclin-like 160 277 IPR036915 -
Clacu09g2091 335 Pfam Cyclin, N-terminal domain 45 176 IPR006671 -
Clacu09g2091 335 Gene3D - 59 176 - -
Clacu09g2091 335 PANTHER CYCLINS 35 272 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Clacu09g2091 335 SMART Cyclin_C_2 178 311 IPR004367 -
Clacu09g2091 335 FunFam D2/4-type cyclin 59 176 - -
Clacu09g2091 335 Gene3D - 49 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1915 Clacu-Chr1:31254027 Clacu09g2091 Clacu-Chr9:35717818 3.30E-46 dispersed
Clacu05g2703 Clacu-Chr5:34600131 Clacu09g2091 Clacu-Chr9:35717818 3.10E-125 dispersed
Clacu09g2091 Clacu-Chr9:35717818 Clacu10g1013 Clacu-Chr10:21768793 6.20E-51 dispersed
Clacu09g2091 Clacu-Chr9:35717818 Clacu08g1308 Clacu-Chr8:23029273 8.30E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2091 K18810 - csv:101210686 617.846