Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2119 ATGGGAGTTTTCGAAACGGTGAAAAACATCGGCAGCGATCACGCCCCGGTCGTCCCCTTGACGTTGTTCGTCGCCGTTCTCTGTTTTTCTTTGGTTATTGGCCACTTGCTTGAAGAAAATCGATGGGTTAATGAATCCATCACCGCCATTATCATTGGAGTTGTTACTGGAACGATCATATTGGTCTGTAGCAAGGGGAAAAATTCTCATATCCTAACTTTTAATGAAGAAGTGTTCTTCATGTATCTTCTTCCACCAATAATCTTCAATGCGGGATTTCAAGTTAAAAAGAAGCAGTTCTTCCATAATTTCTTGACCATCATGCTGTTTGGTGTGGTTGGTGTTTTCATATCTGCACTTATTATAACGGCTGGCAGCCAGTGGCTGTTTCCGAGAATGGGCTTTCATGGTCTGTCGGCGCGGGACTATGTTGCTATAGGCGCTATCTTTTCATCCACGGACACAGTATGCACCCTGCAGGTACTACACCAAGAGGAAACACCTTTACTCTACAGCCTAGTCTTTGGGGAAGGAGTGGTGAACGATGCAACATCAGTTGTTCTCTTCAATGCAGTCCAGAAGATTGATATCACTAGGCTTAACAACAAGACAGCCCTTCATCTTTTGGGAGATTTTTGTTACTTATTTTCGACTAGCACTGTCCTTGGAGTGACTACTGGGCTTCTAACAGCATATATCCTTAAAACCTTATATTTCGGGAGACATTCAAGTGTGCGTGAGCTTGCGATAATGGTTTTAATGGCTTACCTATCTTACATGCTAGCAGAGTTACTGGAGTTGAGTGGAATACTCACAGTTTTCTTTTGTGGAATTATCATGTCGCACTATGCATGGCATAACGTGACTGATAGTTCAAGAATTACCACCAGGCATGTATTTGCAATGATGTCGTTCGTTGCTGAAACTGCAATATTTCTTTATGTGGGCATGGATGCTCTTGACATTGAGAAGTGGAAGATAACTAAATTAAGCTTGTGGAAGTTGCTTGGTACATATACTGCCATAGTTTTCTTGATTTTGCTTGGTCGTGCTGCCTTTGTATTTCCCCTGTCTGCTATATCTAATTACTTCATTAAGCGTGAAGATAGATCATCGTCGCCTTCTATGATCTCATTTAAAGAACAGATCATTATATGGTGGGCTGGACTGATGAGAGGAGCTGTGTCTATTGCTCTGGCTTTCAAACAGTTCACATATTCCGGGGTTACAGTGGATCCAACCCATGCAACAATGATTACCAACACCACAATTGTTGTACTCTTCACCACAGTGGTATTTGGGTTTCTAACAAAGCCACTCATAAGATGTCTGCTTCCTCCCAACCAAGCAAGTAGCAGCGCAAGCAACTCCAGACCAAAGTTCACTGAAGAGGACATAACTCTCCCTTTACTCTCCATGGAAGAGTCTGCTGCAACGAATGTCCTCCGGGCCAAGGATAGTTTGTCAATGCTAATAGAGAGGCCTGTTTACACCATACATTTCTTTTGGAGGAAATTTGATGATTCCTACATGAGACCTATATTTGGAGGGCCTCGCCACAACCAACAACCTGGTGGTTCTGGTTGTTAG 1590 42.89 MGVFETVKNIGSDHAPVVPLTLFVAVLCFSLVIGHLLEENRWVNESITAIIIGVVTGTIILVCSKGKNSHILTFNEEVFFMYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVVGVFISALIITAGSQWLFPRMGFHGLSARDYVAIGAIFSSTDTVCTLQVLHQEETPLLYSLVFGEGVVNDATSVVLFNAVQKIDITRLNNKTALHLLGDFCYLFSTSTVLGVTTGLLTAYILKTLYFGRHSSVRELAIMVLMAYLSYMLAELLELSGILTVFFCGIIMSHYAWHNVTDSSRITTRHVFAMMSFVAETAIFLYVGMDALDIEKWKITKLSLWKLLGTYTAIVFLILLGRAAFVFPLSAISNYFIKREDRSSSPSMISFKEQIIIWWAGLMRGAVSIALAFKQFTYSGVTVDPTHATMITNTTIVVLFTTVVFGFLTKPLIRCLLPPNQASSSASNSRPKFTEEDITLPLLSMEESAATNVLRAKDSLSMLIERPVYTIHFFWRKFDDSYMRPIFGGPRHNQQPGGSGC 529
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 35961608 35969079 - ClG42_09g0211900.10 Clacu09g2119 258427
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2119 529 Gene3D - 139 191 - -
Clacu09g2119 529 Pfam Sodium/hydrogen exchanger family 34 442 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Clacu09g2119 529 NCBIfam sodium/hydrogen exchanger 3 21 452 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g2119 529 PRINTS Na+/H+ exchanger signature 147 157 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g2119 529 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g2119 529 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g2119 529 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g2119 529 PANTHER SODIUM/HYDROGEN EXCHANGER 18 520 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0632 Clacu-Chr9:5424075 Clacu09g2119 Clacu-Chr9:35961608 6.40E-158 dispersed
Clacu09g2119 Clacu-Chr9:35961608 Clacu06g0532 Clacu-Chr6:6078624 1.80E-166 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2119 - - - 0.0