Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu09g2120 | ATGAGTTGCTGGAAGAGTTTTCCGGCAATGTGTTCTCTCCTTCTTCTGTTTCCTCTGTTTCTTCACTCGTCCCTGGTGCTGGTATCTGCTCAGGGATCTAATAGTACGGCTCTATGGCAGACTCTGAGTGGAAATGCTCCATTTGTTGTGGCTCGCGGTGGATTTTCAGGGCTTTTTCCTGATTCATGTGGAGTTGCCTACAATTTTGCAGTTATGGTTAGTGTTCCTGATGTGATCTTATGGTGCGATGTGCAATTAACCAAAGATGGAGTTGGAATTTGTCTTCCGGATCTGAGGCTTGACAATGCTACTGATGCTCCGACTATTCTAGGGACAAACCGCAGCAATGTCTATCTTGTTAATGGTGTCCGTACTAAGGGATTGTTTACGGTCGATTTCAATTTCAAAGAACTGGAAAATGTTTCTCTTGTTCAAGGAATCTATTCTCGAACTAATAAGTTCGATGGCAATGAGTTTGTTATTCTCACTCCTGAAGATGTGGTTAATCAGTTCAAGCCTCCAGGATTTTGGCTAAATATTCAGCATGATGTGTTCTTCACGCAACATAACGTGAGCATGAGGAACTTTGTACTTTCTGTATCCAGAAGCATCATTGTTAACTATATATCATCACCAGAGGTCGGATTTCTCAGAAGTATAGCTGCAAGGATTCCCCGCACAACAAAGTTGATCCTTCGGGTCTTAGGACCCACTGATACTGAGGTTACCACCAACCAGACATATGCCTCTCTCTTAGGAAATCTCACCTTTATCAAGACATTTGCTTCTGGAATTCTTGTACCTAAGACTTATATATGGCCCATTAGTAACGATGGTTACATACAACAACCTCAAACCTCTCTTGTTTCTGATGCTCACAAAGCACAGCTGGAAATTTTTGCATCAGACTTCTTTAGTGACCTTCCATTAAGCTACAATTACAGTTACGATCCCGTTACTGAATACCTGTCTTACTTTGACAATGGTAAATTTTCAGTTGATGGTGTGCTCACTGATTTCCCCATTTCTCCATCGTCAGCTATTGACTGTTTTGCTCATTTGGATAAGAACGCCAAAAGTCAAGCCAAGCCTTTGGTTATTTCAAAATTTGGAGCTAGTGGAGACTTTCCTGCTTGCACAGATTTGGCATACTCGAATGCCATTTCAGATGGTGTTGAAGTACTCGACTGTCCTGTTCAAATAACCAAAGACGGGATACCATTTTGCATGAGCTCAATTAATCTCATCGACAGCACAACAATATCTCAATCACCATTCATTAACCGTTCAAAAAAAATTCCCGAAATTAGTCCTAACGAAGGAATTTTTGCTTTTGACTTAACATGGGAAGAGATTCAAGGCCTAACCCCGTCAATATTGAACCCTTATTCGAAGTTCACGTTGTTCCGAAATCCAAGGTTCAGAAACAGTGGAAAATTCATAACACTACCTGATTTCTTGGCCTTCGCAAAGAATGCAAGCACTCTTTCTGGTGTCTTGATCCATATTGAGCATGCAGCCTACCTTGCTAAGGATCAGGGTTTAAGTGTAACTGATGCGGTCTTTGGTTCCTTAAGCAAAGCTGGTTATGATAATCAGACAGCCCTTAAAGTATTGATTCAATCTCCAGATAGTGCTGTTCTAAAAAAATTTAAACAGGAAAATAACAGTTACGAGCTTGTTTATCAAGTTGACATGTCAATTGGGGATGTGCTCAATACAACTGTTGTGGACATAAAGAGTTTTGCCAACTCTGTGACTATCAGCAAGCCCTCTGTCTTCCCTGAAAATCAGCTATTTCTCACGGGATCTACAGATGTTGTGAAGAAGCTGCAAGCACTTAAGCTCTCTGTATATGTGGAAACCTTCGACAATGAATTTGTCTCTCAAGCATGGGATTTCTTCTCCGATGCAACTGTAGAGATCAACTCATATGTTTTGGGAGCCAACATTGATGGAGTCATCACCAGCTTCCCAAAGACATCTGCTAGATATAAAAAGAACCGATGTTTATCAATGAAAGAAACACCTAATTACATGAGCCCTGTCCAGCCTGGTAGCTTGTTGCAACTTGTTACTCCAGACTACCTGCCTCCGAAGACAGCTCCGAGCCCGGTTTTGAATGACAAAGACGTAGCTGAGCCACCATTGCCTCCGGTTTCGGCCAAAGCCCCAGCACCTGCTGTCGACAGTGGCCCTACAGCAGCATCTCCAACTTCTAAACCCAATGGACAACCTAAGCTTGGAGCTGGAGCAGGCTTCTTGTTCTTGAACCTTGCCATACTTTCCATTGCTCTTCTTCCATTCTGA | 2310 | 42.25 | MSCWKSFPAMCSLLLLFPLFLHSSLVLVSAQGSNSTALWQTLSGNAPFVVARGGFSGLFPDSCGVAYNFAVMVSVPDVILWCDVQLTKDGVGICLPDLRLDNATDAPTILGTNRSNVYLVNGVRTKGLFTVDFNFKELENVSLVQGIYSRTNKFDGNEFVILTPEDVVNQFKPPGFWLNIQHDVFFTQHNVSMRNFVLSVSRSIIVNYISSPEVGFLRSIAARIPRTTKLILRVLGPTDTEVTTNQTYASLLGNLTFIKTFASGILVPKTYIWPISNDGYIQQPQTSLVSDAHKAQLEIFASDFFSDLPLSYNYSYDPVTEYLSYFDNGKFSVDGVLTDFPISPSSAIDCFAHLDKNAKSQAKPLVISKFGASGDFPACTDLAYSNAISDGVEVLDCPVQITKDGIPFCMSSINLIDSTTISQSPFINRSKKIPEISPNEGIFAFDLTWEEIQGLTPSILNPYSKFTLFRNPRFRNSGKFITLPDFLAFAKNASTLSGVLIHIEHAAYLAKDQGLSVTDAVFGSLSKAGYDNQTALKVLIQSPDSAVLKKFKQENNSYELVYQVDMSIGDVLNTTVVDIKSFANSVTISKPSVFPENQLFLTGSTDVVKKLQALKLSVYVETFDNEFVSQAWDFFSDATVEINSYVLGANIDGVITSFPKTSARYKKNRCLSMKETPNYMSPVQPGSLLQLVTPDYLPPKTAPSPVLNDKDVAEPPLPPVSAKAPAPAVDSGPTAASPTSKPNGQPKLGAGAGFLFLNLAILSIALLPF | 769 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 35980381 | 35987489 | + | ClG42_09g0212000.10 | Clacu09g2120 | 258428 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu09g2120 | 769 | MobiDBLite | consensus disorder prediction | 703 | 744 | - | - | |
| Clacu09g2120 | 769 | FunFam | Glycerophosphodiester phosphodiesterase GDPDL3 | 362 | 666 | - | - | |
| Clacu09g2120 | 769 | PANTHER | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE | 15 | 730 | - | GO:0008889(PANTHER) | |
| Clacu09g2120 | 769 | CDD | GDPD_SHV3_repeat_2 | 364 | 665 | - | - | |
| Clacu09g2120 | 769 | CDD | GDPD_SHV3_repeat_1 | 47 | 347 | - | - | |
| Clacu09g2120 | 769 | SUPERFAMILY | PLC-like phosphodiesterases | 46 | 342 | IPR017946 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Clacu09g2120 | 769 | ProSiteProfiles | GP-PDE domain profile. | 47 | 348 | IPR030395 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Clacu09g2120 | 769 | FunFam | Glycerophosphodiester phosphodiesterase GDPDL3 | 45 | 347 | - | - | |
| Clacu09g2120 | 769 | SUPERFAMILY | PLC-like phosphodiesterases | 363 | 665 | IPR017946 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Clacu09g2120 | 769 | Gene3D | Phosphatidylinositol (PI) phosphodiesterase | 362 | 665 | IPR017946 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Clacu09g2120 | 769 | Gene3D | Phosphatidylinositol (PI) phosphodiesterase | 45 | 344 | IPR017946 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Clacu09g2120 | 769 | ProSiteProfiles | GP-PDE domain profile. | 364 | 666 | IPR030395 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Clacu09g2120 | 769 | Pfam | Glycerophosphoryl diester phosphodiesterase family | 82 | 301 | IPR030395 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Clacu09g2120 | 769 | Pfam | Glycerophosphoryl diester phosphodiesterase family | 371 | 660 | IPR030395 | GO:0006629(InterPro)|GO:0008081(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g1996 | Clacu-Chr1:31886627 | Clacu09g2120 | Clacu-Chr9:35980381 | 2.90E-158 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu09g2120 | - | - | - | 0.0 |