Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2121 ATGCCTGAGAAAGAGAGCCACAATGTTGTTACAGAGCCTCGTTTGGTAGCTAGAAAGTTTCTGGCTAGGCCTCAGCATGAAGGGTTGGGCGCCATTGTTAGAAGGAGCATTGGAAGGTTTGAGCTGAAATACTTTGACCCTTTTCTAGTTTTGGATGAATTTTCAGTTACTGCCCCAGCTGGGTTCCCAGATCATCCACATAGAGGATTTGAGACAGTGACATATATGCTGCAGGGAACTGTGACACATGAAGATTTTGAAGGGCACAAGGGAACAATAGGAGCAGGTGACTTGCAATGGATGACTGCAGGTAGAGGAATTGTACATTCAGAAATGCCTGCAGCCCAAGGGACCCAAAAGGGCCTCCAACTATGGATCAACCTCTCTTCCAAGAACAAAATGATTGAGCCAAATTACCAAGAAGTTTCAAGCAAGGGAATTCCAGAAGCTTCAAAAGATGGAGTGAGAGTGAAAGTCATAGCTGGTGAGGCATTGGGAGCAAAATCACCAATCTACACAAGAACTCCAACCATGTACTTGGACTTCACTCTCAAGCCAAAAGCTCATCTCCAGCAGCTGATCCCGTCGTCATGGAACGCATTCGTGTACATTCTTGAAGGAGAAGGCGTCTTCGGCAGCTCAAAAGCGACATCAACAACAGCACATAACCTACTTCTTCTCGGTTTCGGGGACGGTTTAGAGGTTTGGAATAAGTCAGCCAAGCCTCTTAGGTTCATTTTGGTAGGAGGTGAACCATTGAGTGAGCCTGTTGTGCAATTTGGGCCATTTGTGATGAACACTCAAGAAGAAATTGACCAAACAATTGATGATTTTGATAACTATACCAATGGATTTGAGAAAGCAAGGCATTGGAGATCAGAAGCTGGAATTTCTCTTGGGTTCTAA 906 44.81 MPEKESHNVVTEPRLVARKFLARPQHEGLGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGTVTHEDFEGHKGTIGAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKNKMIEPNYQEVSSKGIPEASKDGVRVKVIAGEALGAKSPIYTRTPTMYLDFTLKPKAHLQQLIPSSWNAFVYILEGEGVFGSSKATSTTAHNLLLLGFGDGLEVWNKSAKPLRFILVGGEPLSEPVVQFGPFVMNTQEEIDQTIDDFDNYTNGFEKARHWRSEAGISLGF 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35996354 35999772 + ClG42_09g0212100.10 Clacu09g2121 258429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2121 301 Gene3D Jelly Rolls 148 253 IPR014710 -
Clacu09g2121 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Clacu09g2121 301 CDD cupin_pirin_N 33 128 - -
Clacu09g2121 301 FunFam pirin 27 163 - -
Clacu09g2121 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Clacu09g2121 301 CDD cupin_pirin_C 176 252 - -
Clacu09g2121 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Clacu09g2121 301 PANTHER PIRIN-RELATED 7 294 IPR012093 -
Clacu09g2121 301 Pfam Pirin 33 126 IPR003829 -
Clacu09g2121 301 PIRSF Pirin 12 292 IPR012093 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1672 Clacu-Chr7:31433186 Clacu09g2121 Clacu-Chr9:35996354 1.70E-118 dispersed
Clacu09g2121 Clacu-Chr9:35996354 Clacu10g0446 Clacu-Chr10:5551941 2.00E-133 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2121 K06911 - csv:101216351 592.038