Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2139 ATGATGAAGAGGTTCTTGTGTTTCCTATGTAATAATAATCATAATGGGTTTTTCCCTCTCATTATCATTCTTGGTTTTCTTCTCTTGGGTGTCGCCGGAGAGATCTCCGGCGGCGGCGCTGGTGGAGGAGCAGAGAGATCATATGGTATGATAAGTTGGGATGATTTGCGTGTGGATGTTTCGTGGCGGCAGGGGATGAGCTCCGGCGAGGGGTTGGAGAATGGGACAAGAATAATTGTGGTGGATAAGAATGGCTCCGGCGACTCCACGACGGTGCAAGGGGCGGTGGATATGGTTCCTCATAATAACAAACAGAGAGTTAAGATTTGTATTCTTCCTGGCATTTACAGAGAGAAGGTATACATACCAATCACCAAACCATATATTTCCTTAATCGGAAACAAGAAACGAGTTACAGATACTGTTATTACATGGAACGACAAAGCTTCCGACAAAGATATGAATGGGGTCGAGCTTGGGACGTATAGAACAGCGACAGTTGCGATCGACTCTGACTACTTTTGTGCAACAGGAATCACATTTGAGAATACAATTGTTGCAAAGCCTGGAGATAAGGGAAGACAAGGTGTAGCTTTAAGAATAACAGGGGATAAGGCCATGTTTTATAGAGTAAAATTCTTAGGAGGACAAGATACACTTTTGGATGACATGGGCACACATTACTTCTATCAATGTCACATTCAAGGAAGTGTTGATTTCATATTTGGCACAGCTAGATCACTCTATGAGCAATGTGTTATAACTTCCACAGCAGAGAGCTTTGGAGCAATAGCAGCACATCATCGGGTCTCGCCAAATGATGACACTGGGTTCTCTTTCGTGCGCAGCGTAATTAATGGAAGTGGCAAAGTACTCCTGGGAAGAGCATGGGGAAACTATTCAAGAATAATTTATTCTTACTGTTACATTGAAGATGTAATAACTCCATTAGGTTGGGATGACTGGAATGACCCATCAAGACAAAGGACAGTAGTTTTTGGGCAATATAATTGCAGGGGCAGTGGAGCTAACACACAAGGTTGGGTGCCATGGGCAAAGACTTTCAGCTATGAGGAAGTGAGACCTTTTGTAGATAGAAAATATATCAAAGGAGAACAATGGCTTAACTTATGA 1134 42.77 MMKRFLCFLCNNNHNGFFPLIIILGFLLLGVAGEISGGGAGGGAERSYGMISWDDLRVDVSWRQGMSSGEGLENGTRIIVVDKNGSGDSTTVQGAVDMVPHNNKQRVKICILPGIYREKVYIPITKPYISLIGNKKRVTDTVITWNDKASDKDMNGVELGTYRTATVAIDSDYFCATGITFENTIVAKPGDKGRQGVALRITGDKAMFYRVKFLGGQDTLLDDMGTHYFYQCHIQGSVDFIFGTARSLYEQCVITSTAESFGAIAAHHRVSPNDDTGFSFVRSVINGSGKVLLGRAWGNYSRIIYSYCYIEDVITPLGWDDWNDPSRQRTVVFGQYNCRGSGANTQGWVPWAKTFSYEEVRPFVDRKYIKGEQWLNL 377
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 36162530 36166839 + ClG42_09g0213900.10 Clacu09g2139 258447
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2139 377 Gene3D - 74 377 IPR012334 -
Clacu09g2139 377 FunFam Pectinesterase 74 377 - -
Clacu09g2139 377 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 76 376 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Clacu09g2139 377 SUPERFAMILY Pectin lyase-like 77 376 IPR011050 -
Clacu09g2139 377 Pfam Pectinesterase 79 371 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu09g2139 377 ProSitePatterns Pectinesterase signature 2. 234 243 IPR033131 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1102 Clacu-Chr7:25569731 Clacu09g2139 Clacu-Chr9:36162530 3.20E-67 dispersed
Clacu09g0487 Clacu-Chr9:4182782 Clacu09g2139 Clacu-Chr9:36162530 5.00E-73 dispersed
Clacu09g1845 Clacu-Chr9:33171610 Clacu09g2139 Clacu-Chr9:36162530 1.90E-54 dispersed
Clacu09g2139 Clacu-Chr9:36162530 Clacu11g0580 Clacu-Chr11:5496050 1.70E-65 dispersed
Clacu09g2139 Clacu-Chr9:36162530 Clacu08g1655 Clacu-Chr8:26274308 3.20E-72 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2139 K01051 - csv:101209316 632.484