Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu09g2139 | ATGATGAAGAGGTTCTTGTGTTTCCTATGTAATAATAATCATAATGGGTTTTTCCCTCTCATTATCATTCTTGGTTTTCTTCTCTTGGGTGTCGCCGGAGAGATCTCCGGCGGCGGCGCTGGTGGAGGAGCAGAGAGATCATATGGTATGATAAGTTGGGATGATTTGCGTGTGGATGTTTCGTGGCGGCAGGGGATGAGCTCCGGCGAGGGGTTGGAGAATGGGACAAGAATAATTGTGGTGGATAAGAATGGCTCCGGCGACTCCACGACGGTGCAAGGGGCGGTGGATATGGTTCCTCATAATAACAAACAGAGAGTTAAGATTTGTATTCTTCCTGGCATTTACAGAGAGAAGGTATACATACCAATCACCAAACCATATATTTCCTTAATCGGAAACAAGAAACGAGTTACAGATACTGTTATTACATGGAACGACAAAGCTTCCGACAAAGATATGAATGGGGTCGAGCTTGGGACGTATAGAACAGCGACAGTTGCGATCGACTCTGACTACTTTTGTGCAACAGGAATCACATTTGAGAATACAATTGTTGCAAAGCCTGGAGATAAGGGAAGACAAGGTGTAGCTTTAAGAATAACAGGGGATAAGGCCATGTTTTATAGAGTAAAATTCTTAGGAGGACAAGATACACTTTTGGATGACATGGGCACACATTACTTCTATCAATGTCACATTCAAGGAAGTGTTGATTTCATATTTGGCACAGCTAGATCACTCTATGAGCAATGTGTTATAACTTCCACAGCAGAGAGCTTTGGAGCAATAGCAGCACATCATCGGGTCTCGCCAAATGATGACACTGGGTTCTCTTTCGTGCGCAGCGTAATTAATGGAAGTGGCAAAGTACTCCTGGGAAGAGCATGGGGAAACTATTCAAGAATAATTTATTCTTACTGTTACATTGAAGATGTAATAACTCCATTAGGTTGGGATGACTGGAATGACCCATCAAGACAAAGGACAGTAGTTTTTGGGCAATATAATTGCAGGGGCAGTGGAGCTAACACACAAGGTTGGGTGCCATGGGCAAAGACTTTCAGCTATGAGGAAGTGAGACCTTTTGTAGATAGAAAATATATCAAAGGAGAACAATGGCTTAACTTATGA | 1134 | 42.77 | MMKRFLCFLCNNNHNGFFPLIIILGFLLLGVAGEISGGGAGGGAERSYGMISWDDLRVDVSWRQGMSSGEGLENGTRIIVVDKNGSGDSTTVQGAVDMVPHNNKQRVKICILPGIYREKVYIPITKPYISLIGNKKRVTDTVITWNDKASDKDMNGVELGTYRTATVAIDSDYFCATGITFENTIVAKPGDKGRQGVALRITGDKAMFYRVKFLGGQDTLLDDMGTHYFYQCHIQGSVDFIFGTARSLYEQCVITSTAESFGAIAAHHRVSPNDDTGFSFVRSVINGSGKVLLGRAWGNYSRIIYSYCYIEDVITPLGWDDWNDPSRQRTVVFGQYNCRGSGANTQGWVPWAKTFSYEEVRPFVDRKYIKGEQWLNL | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 36162530 | 36166839 | + | ClG42_09g0213900.10 | Clacu09g2139 | 258447 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu09g2139 | 377 | Gene3D | - | 74 | 377 | IPR012334 | - | |
| Clacu09g2139 | 377 | FunFam | Pectinesterase | 74 | 377 | - | - | |
| Clacu09g2139 | 377 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 76 | 376 | - | GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER) | |
| Clacu09g2139 | 377 | SUPERFAMILY | Pectin lyase-like | 77 | 376 | IPR011050 | - | |
| Clacu09g2139 | 377 | Pfam | Pectinesterase | 79 | 371 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Clacu09g2139 | 377 | ProSitePatterns | Pectinesterase signature 2. | 234 | 243 | IPR033131 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu07g1102 | Clacu-Chr7:25569731 | Clacu09g2139 | Clacu-Chr9:36162530 | 3.20E-67 | dispersed | |
| Clacu09g0487 | Clacu-Chr9:4182782 | Clacu09g2139 | Clacu-Chr9:36162530 | 5.00E-73 | dispersed | |
| Clacu09g1845 | Clacu-Chr9:33171610 | Clacu09g2139 | Clacu-Chr9:36162530 | 1.90E-54 | dispersed | |
| Clacu09g2139 | Clacu-Chr9:36162530 | Clacu11g0580 | Clacu-Chr11:5496050 | 1.70E-65 | dispersed | |
| Clacu09g2139 | Clacu-Chr9:36162530 | Clacu08g1655 | Clacu-Chr8:26274308 | 3.20E-72 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu09g2139 | K01051 | - | csv:101209316 | 632.484 |