Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2146 ATGGGTAGCCAAGAAGCTAGACAGCCACTGTTACCAACATCGTCTAATACTGTTGGAAAAAGGTTAATAGATATCCCTAGAAGCAAAAGACGATTGAGGCGCACTAAGAGTGCTCCTCATGCAGATTCTCCTCATACAGAGATCACCTGCACCGGCAACGTTCCGGACACTGGTCCAGTTCCACGTTCAGGATTAATTTTCGGAAATATACACCCAAGTTTCAGAAGAGCAGCCTTAGTTTTAATAATATACCTGGGTATAGGAACTTTATGTTTTTACCTTGTCAGGTACCAAATCAAAGGTGAAAAAACAAACGGAATAGTTGATGCCATTTATTTCACTATTGTGACAATGACAACTGTTGGATATGGAGATCTTGTCCCAAACAGTCCTTCCACAAAACTACTAGCTTGTGCTTTCGTTTTCACAGGAATGGCCCTAGTCGGCCTAATACTGAGCAATGCAGCCGACTATTTGGTAGAGAAGCAGGAAATCTTGCTATTTAAAGCCTTCCACAGGCAACAAAATGGCCATTGTGACATTAGGAAAGAAATTGATACTAATAAAGCTAGAAACAAGTGTATAGTGGTGTTTCTCATTCTTCTTTTGTTCATCATTTCTGGGACTGCCTTTCTAGTATTCCTTGAGAAGTTAGATTTTATCGATGCCTTTTATTGTGTATGTTCTACGATCACGACGCTAGGCTATGGAGATAAAAGCTTCTCGACCAGGTGGGGACGTCTGTTTGCCATTTTCTGGATCTTGATAAGTACCATCACTCTAGCCCAGTTTTTCCTTTCCATCGCTGAGCTAAACACTGAAAGAAGGCAAAAATCTCTGGTGAAGTGGGTTCTATGTAAAAAGGTGACAGACTTAGACCTCGAGGTTGCAGATCTCGATGATGACGGGGTCGTTGGGGCTGCAGAATTTGTCTTATACAAGCTCAAGGAGATGGGAAAGATTACTGAAGATGACATTACACCTGTGTTGAAGGAATTTGAGAATCTTGATGTTGATCAATCAGGAACCCTGTCCAAATCTGATATAACACTTGCTCAATTATCTTAA 1068 41.1 MGSQEARQPLLPTSSNTVGKRLIDIPRSKRRLRRTKSAPHADSPHTEITCTGNVPDTGPVPRSGLIFGNIHPSFRRAALVLIIYLGIGTLCFYLVRYQIKGEKTNGIVDAIYFTIVTMTTVGYGDLVPNSPSTKLLACAFVFTGMALVGLILSNAADYLVEKQEILLFKAFHRQQNGHCDIRKEIDTNKARNKCIVVFLILLLFIISGTAFLVFLEKLDFIDAFYCVCSTITTLGYGDKSFSTRWGRLFAIFWILISTITLAQFFLSIAELNTERRQKSLVKWVLCKKVTDLDLEVADLDDDGVVGAAEFVLYKLKEMGKITEDDITPVLKEFENLDVDQSGTLSKSDITLAQLS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36219366 36220608 + ClG42_09g0214600.10 Clacu09g2146 258454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2146 355 SUPERFAMILY Voltage-gated potassium channels 182 292 - -
Clacu09g2146 355 ProSitePatterns EF-hand calcium-binding domain. 337 349 IPR018247 -
Clacu09g2146 355 PRINTS Two pore domain K+ channel signature 116 144 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Clacu09g2146 355 PRINTS Two pore domain K+ channel signature 232 241 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Clacu09g2146 355 FunFam Calcium-activated outward-rectifying potassium channel 1 71 166 - -
Clacu09g2146 355 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 77 292 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Clacu09g2146 355 Pfam Ion channel 200 272 IPR013099 -
Clacu09g2146 355 Pfam Ion channel 80 160 IPR013099 -
Clacu09g2146 355 SUPERFAMILY Voltage-gated potassium channels 71 178 - -
Clacu09g2146 355 Gene3D - 178 282 - -
Clacu09g2146 355 Gene3D - 71 165 - -
Clacu09g2146 355 MobiDBLite consensus disorder prediction 29 56 - -
Clacu09g2146 355 SUPERFAMILY EF-hand 293 350 IPR011992 -
Clacu09g2146 355 ProSitePatterns EF-hand calcium-binding domain. 298 310 IPR018247 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1112 Clacu-Chr1:16392850 Clacu09g2146 Clacu-Chr9:36219366 4.90E-90 dispersed
Clacu01g2509 Clacu-Chr1:35437240 Clacu09g2146 Clacu-Chr9:36219366 3.60E-50 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2146 K05389 - csv:101216032 606.675