Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2171 ATGTTGATGTCCTTTTACGGATTGAATATCAATCAAGAAACAAAGAAAGAAGAAGAAGAAGAAAACAGAGTATCTGGGTTAGGTTGGTCGTTAACGGGGTTTGTTGTCTTGTTCTTGATAAGGAGCCTGGTTGGTTTAGTTGGAAAAGGTCAATTTGCCATGATTCATTCTGGTTTCTTCCTTGCGGGACCGTCATTTAATTCTGATGCTACTACGTCTTTCATATCAATGCCGGTGTCTGGAGAAGATGGTGCTACGGGGGATGATATCGGAAACGATACGTCTGATTCCGTCCCCCCTTCTTTTTGGGTTAGAACAGCGATGAAAATATCGAGAGCTAGATGGTTTATTTTCTTGAGAAGAGTTTTCCACTACCAAAACGGATCGAGATCTGATCTTGGGCCGAATCCTTTCAATTCAGGTTCGTGGATGGCGATGGAATTTGTAGCTCTGTTGTTTCAACTAATTATCTCAGCGTTTACTTTTGCCATTTCACGGGCTGAGAGTCCAGTTTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGTGTTCTTAGCTTATTGCTTCTCTGTGGCCGCCGTCGGTATAATTATCTAATGCAGGGAGATGGTGACAGTCTTTCAGATATAGAACACGAACAGCAGAGGAGCAATGAATCATCTAGGTACTCACATTTGATGAACAAATGCCGCACGTCTCTCGATCTTTTCTTTGCAATATGGTTTGTAATGGGCAATCTTTGGGCCTTTGATTCTCGCCTAGCCTCGTTCCAGAGAGCTCCCAAGCTACATCTACTCTGCAGCTTCCTGCTAATTTGGAATGCCATCTGCTACTCTTTCCCATTTATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCTTTATAGGATATAACATTAACATGGGATCAACCGAAAAAGGAGCGTTAGACGATCAAATTTCCCAGCTACCATGCTGGAAATACAAAGCAGTGGACGCCAACATCAACCCTGGAAGTCAACCCCACAATAGCAATACAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTTCCATGTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCGCTTTTTGATCTTCAGTCTCCATCTCTGTTTTCGCCTTCCTCTCCTTTTCCTCCACCATTTCCGAAAGCTCCCCTTTTCCCTCCATTTCCTTCTATTTACACTTCCATGTCCCCTTTTCCCTCTTTCTTTCCCCTTTTCCCCATTGCCTTTGAGGCTCATTCAAGTTACCCCTTCAAAGTTAAAACCCAACTGCCTGATCCTCGTGGGTTTGTTCTGGACTGTGACGATAAGGAAAGGTCGTTTTCAATGATCAATTCTGGTTATTTCGTTTCGGGGCCGTCGTGTAACTGTGGTGGCACTGCTTCCTTTATCTCGAATTCGTTGGTGGAAGAAGATGGTGCAGGTGCGGATGTTAGAGACGACAATTCTGTTGCTCTGCCTGCATCTTTCTGGGTTAGGATAGCGATGAGAGTGTCCAGAGCCAGGTGGTTCATTTTCTTACGAAGGGTATTTCACTACCAGAATGGATCAAGATCGGATCTCAGGTCTGATCCTTTCAATTCTATCTCGTGGATGGCTATGGAGCTGGTAGCTATGGTGTTTCAGCTGGCCATCACAGTGTTTTTTCTTGCCATTTCAGAGACGGAGAAGCCAGTTTGGCCTATGAGACTGTGGATAGTTGGTTATGATCTAGGATGCATTCTTAGTTTGTTGCTTCTCTATGGGCGATATTGGCATCTTTATTTAATGCGTGGAGACCATGTCGGCCTTTCTGAGACCGAGCAGCGGAGGAGCAGTCAAGCATCAAGGAGCTTGCGTTTGATGAACAAATGCCGGTCATCTCTTGAACTTTTCTTTGCAATATGGTTCGTAATGGGTAATGTTTGGATTGTCGATTCTCGCTTCAGTTCGTTCCAAAGAGCTCCCAAGCTTCATCTGCTATGTGTCTTCCTATTAGTTTGGAATGCCATCTGCTACTCCTTTCCGTTCATTCTCTTTCTGCTGCTATGTTGCTGTGTGCCATTGGTTAGTAGCCTTCTAGGATATAACATTAACATGGCATCAACCGACAAAGGAGCATCGGATGATCAAATATCTGAGCTACCGTGCTGGAGATATAAAGTGAGCTCAATGCAACCTGATAGTAACAAAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGTCAAGTACAGAGATGAAGAAGAAGTAAGACAGTTACCTTGTTCCCATTTGTTCCATCTCAAGTGTGTAGATAAGTGGCTTTCAATCACATCTTCTTGCCCTCTCTGTAAGCAACAACTTCAAAAATAG 2436 43.72 MLMSFYGLNINQETKKEEEEENRVSGLGWSLTGFVVLFLIRSLVGLVGKGQFAMIHSGFFLAGPSFNSDATTSFISMPVSGEDGATGDDIGNDTSDSVPPSFWVRTAMKISRARWFIFLRRVFHYQNGSRSDLGPNPFNSGSWMAMEFVALLFQLIISAFTFAISRAESPVWPMRLWIGGYDLGCVLSLLLLCGRRRYNYLMQGDGDSLSDIEHEQQRSNESSRYSHLMNKCRTSLDLFFAIWFVMGNLWAFDSRLASFQRAPKLHLLCSFLLIWNAICYSFPFILFLLLCCCVPLISSFIGYNINMGSTEKGALDDQISQLPCWKYKAVDANINPGSQPHNSNTGLPKEDPECCICLAKYIDKEEVRQLPCFHVFHLKCVDKWLAITSSCPLFDLQSPSLFSPSSPFPPPFPKAPLFPPFPSIYTSMSPFPSFFPLFPIAFEAHSSYPFKVKTQLPDPRGFVLDCDDKERSFSMINSGYFVSGPSCNCGGTASFISNSLVEEDGAGADVRDDNSVALPASFWVRIAMRVSRARWFIFLRRVFHYQNGSRSDLRSDPFNSISWMAMELVAMVFQLAITVFFLAISETEKPVWPMRLWIVGYDLGCILSLLLLYGRYWHLYLMRGDHVGLSETEQRRSSQASRSLRLMNKCRSSLELFFAIWFVMGNVWIVDSRFSSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLVSSLLGYNINMASTDKGASDDQISELPCWRYKVSSMQPDSNKGLPKEDPECCICLVKYRDEEEVRQLPCSHLFHLKCVDKWLSITSSCPLCKQQLQK 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36444438 36451807 + ClG42_09g0217100.10 Clacu09g2171 258479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2171 811 SMART ringv_2 764 806 IPR011016 GO:0008270(InterPro)
Clacu09g2171 811 ProSiteProfiles Zinc finger RING-type profile. 765 806 IPR001841 -
Clacu09g2171 811 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 519 810 - -
Clacu09g2171 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 720 811 IPR013083 -
Clacu09g2171 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 397 IPR013083 -
Clacu09g2171 811 Pfam Ring finger domain 764 806 IPR001841 -
Clacu09g2171 811 Pfam Ring finger domain 353 393 IPR001841 -
Clacu09g2171 811 CDD RING-H2_RNF6-like 764 806 - -
Clacu09g2171 811 ProSiteProfiles Zinc finger RING-type profile. 354 393 IPR001841 -
Clacu09g2171 811 SUPERFAMILY RING/U-box 349 393 - -
Clacu09g2171 811 SMART ring_2 354 394 IPR001841 -
Clacu09g2171 811 SMART ring_2 765 805 IPR001841 -
Clacu09g2171 811 SUPERFAMILY RING/U-box 760 809 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0773 Clacu-Chr8:17759536 Clacu09g2171 Clacu-Chr9:36444438 6.90E-06 dispersed
Clacu08g1443 Clacu-Chr8:24457700 Clacu09g2171 Clacu-Chr9:36444438 2.20E-45 dispersed
Clacu09g2171 Clacu-Chr9:36444438 Clacu10g1642 Clacu-Chr10:29804694 5.90E-31 dispersed
Clacu09g2171 Clacu-Chr9:36444438 Clacu07g1515 Clacu-Chr7:29760181 2.00E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2171 - - - 0.0