Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2177 ATGCTTGTAATTCTAAGGAATCTCTTTCTTCCTCATCATTTCTTTACCATAGCCTTGCTTTTATGTGTAAAATCCCTTCTCTTTTCTTCTTGTTACTCCATTGATGAGCAGGGTAGAATTCTTCTTGAATGGAAGAATAATCTAACAAGCCCCACAGATGTTTTGCGTTCGTGGAATCCGGAGGCGGCAACGCCATGTTCATGGTTTGGAGTTATGTGCAACTCCAATGGAGAGGTGGTGGAGATAGTCCTGACACTAGTGGAATTGGAAGGTACATTGCCTACAAATTTTCAGGCTCTCAAGTCCTTGAGGGTCCTTGTGATCTCTGAGACGAATATTACTGGAAGAATTCCGAAAGAATTCGGAGATTATAGTGAGCTCAATGTTCTTGATCTTAGCAGAAATTACCTCTTGGGGAAAATCCCAGAAGAGATTTGCAGGCTGAGCAAGCTGCAAGATTTGTTTCTTCATAACAATGATTTTGAAGGGAACCTACCCTTGAAGATTGGAAATCTTTCGAGCCTTGTGAATTTCCAAATCTCAGACAATAATATCGATGGTGAGGTTCCAAAGAGCATTGGAATGTTGAAGAATCTTTATCTTTTCAAAGCTGGAGGGAATAAATTTCTACAGGGTGTAGTGCCAAGGGAGATTGGAAACTGCAGCAGTTTAACGGTGTTAGGCTTATCCGACACCGGAATCTACGGTCCTCTTCCTTCATCAATAGGGATGCTGCAAAAAATCCAGACCATACACATGTATAGATCACAACTTTTTGGTCCACTCCCAGAAGAGATTACAAACTGTAGTGAACTGCAGACTCTTCGACTGTATCAGAATGGTATTTCTGGACGAATACCAAGACGAATCGGGGAGATGAAAAAGCTTAGCGTCCTTCTTCTATGGTTGAACTTGATGGAGGGTGAAATTCCAGAAGAAATTGGCAACTGCCAGGAACTGGTACTATTTGATTTTTCAGAAAATTCTCTAACGGGAACTATACCAAAAAGTCTAGGCCGACTTCCAAAACTCGAAGACATTCAACTAAGAATTAATCAGCTTACTGGTACAATACCACCTGAAATTTCTAATATTTCTACTTTGGTTCACCTGGAAATAGACAACAACAAATTATGTGGGGAGATACCAGTTGATATAGGTAACCTCAAGAACCTGCGTACATTGCTACTATGGGAGAACAAATTAACAGGCCCTATTCCCATCACCCTCCCAGACTGCCCAAATCTCACTTTGATTGATTTATCTTTCAATCAGTTAACAGGTCCAATACCGACACGGATTTTCGCTTTGAAAGGACTCACCAAACTTCTTATGTTATCAAATAATCTATCAGGGATTATTCCTCCTGAAATTGGAAACTGTACCACACTATCCAGGCTAAGACTGTCTAAAAATAAGCTTGGAGGTACTATTCCATCAGAGATGGGAAATCTCAGGAACTTAGAACTTCTTGACATGGGCCAAAACCTTTTTGTTGGAGGATTTCCTTCATCCTTTTCCACATGTAACAAGCTTGAGTCTCTTGACCTACGTTCAAATAGGCTCACTAGTCTTCCAAATACTCTGCCAAAGAGCTTAGTGTATTTTAATGCATCCAACAACAGGCTTAAAGGTCAGCTCAACCCCAACATTGGAGGATTGATGGAATTAACTAAACTAGACCTCAAAAACAACCAGCTTTCAGGGAAAATCCCAGCAGAAATTGTTTCCTGTGAGAAAATCCAGTTTTTAGACCTCAGCAACAATTTCTTCTCTGGAGAGCTCCCTAAGGAATTAGGTACATTTGCTGCACTTGAAATTGCTCTTAATCTAAGTTACAATCAATTCTCAGGTCAAATCCCATATGAATTCTCTGGTCTAACCAAGCTAAGTATTCTAGACCTCTCCCACAACAACTTCTCTGGGGAACTTAGCTTCCTTACAGATCTTGAAAACCTAGTCACTCTAAACATCTCCTACAACCATTTCTCTGGCAAATTGCCCGACAAACCCTTCTTTCAAAAGCTCCCTGAAAGCGCCGTTATCGGAAACAAAGACCTCATTTATGTTTCAGATGGGGGAGATACTCCTAAAGACAATAGGGAATCCAGCAACATAAGCAGAGAAGCAATACATATAGCCGTGCCTATCTTGATCAGCATAAGTGCAGTGCTGTTCTTTTTAGGATTCTACATGCTAATTCGAACCCACATGGCTCGTTTCATCCTCTTCACAGAAGGCAACAAATGGGAAATAACACTGTTTCAAAAGCTCGATTTCTCAATCGACCACATTATAAGAAACTTAACTGCATCCAATGTGATCGGCACAGGAAGCTCCGGTGCGGTTTACAGAATCACAACCCCAAATGGGCAAACAATGGCAGTGAAGAAAATGTGGTCCACCGACGAAAATGGAGCCTTCAACACCGAAATCGAAACTTTGGGATCAATTCGACACAAGAACATAATTAGATTACTGGGTTGGGGATCCAACAGGAGTTTGAAGCTCTTGTTTTATGATTACCTTCCAAATGGAAACTTGAGCTCCCTTATCCATGGCCCTGAAAAAGGAGAAGCAGAGTGGGAAGTCAGATATGAAGTCCTTTTAGGAGTGGCTCACGCTCTAGCTTATCTTCACCATGATTGTATTCCACCAATCGTACATGGCGATGTGAAAACTATGAATATCCTGCTCGGCCATGACTTCGAACCATACCTAGCCGACTTTGGGATAGCCAAAATCGTGAGTACAAAAAGCGGCAATGATAATTCAGAGACGCCATCTTTGAGACCTCAACTTGCTGGCTCTTTCGGCTACATGGCCCCTGAACAAGGGTCGATGTTGAGAGTTACAGAGAAGAGCGATGTGTATAGCTTCGGTGTGGTGATAATGGAAGTTCTAACAGGGCGGCACCCGCTGGACCCGACTTTACCAGGAGGATCCAATTTGGTGCAATGGGTTCAAGATCATTTCACCACACACCGAAACACAGCCGACATTTTCGATTCAAAGCTCAGAGGAAGAACCGATCCCACAATCCACGAAATGATTCAAACCCTAGCCGTCGCATTGGTCTGTGCCAGCGTTAAGGCCGACGATCGACCGCCTATGAAAGATGTCGTCACCATGCTCGAGGAGATTCGACATGTCGAATCGGGAAGAGCTGCTACCGACGTCTCCATGCCGGAAATGGCGGTAGTGGTTCAATCGCCGCCGTAG 3222 42.77 MLVILRNLFLPHHFFTIALLLCVKSLLFSSCYSIDEQGRILLEWKNNLTSPTDVLRSWNPEAATPCSWFGVMCNSNGEVVEIVLTLVELEGTLPTNFQALKSLRVLVISETNITGRIPKEFGDYSELNVLDLSRNYLLGKIPEEICRLSKLQDLFLHNNDFEGNLPLKIGNLSSLVNFQISDNNIDGEVPKSIGMLKNLYLFKAGGNKFLQGVVPREIGNCSSLTVLGLSDTGIYGPLPSSIGMLQKIQTIHMYRSQLFGPLPEEITNCSELQTLRLYQNGISGRIPRRIGEMKKLSVLLLWLNLMEGEIPEEIGNCQELVLFDFSENSLTGTIPKSLGRLPKLEDIQLRINQLTGTIPPEISNISTLVHLEIDNNKLCGEIPVDIGNLKNLRTLLLWENKLTGPIPITLPDCPNLTLIDLSFNQLTGPIPTRIFALKGLTKLLMLSNNLSGIIPPEIGNCTTLSRLRLSKNKLGGTIPSEMGNLRNLELLDMGQNLFVGGFPSSFSTCNKLESLDLRSNRLTSLPNTLPKSLVYFNASNNRLKGQLNPNIGGLMELTKLDLKNNQLSGKIPAEIVSCEKIQFLDLSNNFFSGELPKELGTFAALEIALNLSYNQFSGQIPYEFSGLTKLSILDLSHNNFSGELSFLTDLENLVTLNISYNHFSGKLPDKPFFQKLPESAVIGNKDLIYVSDGGDTPKDNRESSNISREAIHIAVPILISISAVLFFLGFYMLIRTHMARFILFTEGNKWEITLFQKLDFSIDHIIRNLTASNVIGTGSSGAVYRITTPNGQTMAVKKMWSTDENGAFNTEIETLGSIRHKNIIRLLGWGSNRSLKLLFYDYLPNGNLSSLIHGPEKGEAEWEVRYEVLLGVAHALAYLHHDCIPPIVHGDVKTMNILLGHDFEPYLADFGIAKIVSTKSGNDNSETPSLRPQLAGSFGYMAPEQGSMLRVTEKSDVYSFGVVIMEVLTGRHPLDPTLPGGSNLVQWVQDHFTTHRNTADIFDSKLRGRTDPTIHEMIQTLAVALVCASVKADDRPPMKDVVTMLEEIRHVESGRAATDVSMPEMAVVVQSPP 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36499694 36503010 + ClG42_09g0217700.10 Clacu09g2177 258485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2177 1073 Gene3D Ribonuclease Inhibitor 33 205 IPR032675 -
Clacu09g2177 1073 Pfam Leucine Rich Repeat 652 669 IPR001611 GO:0005515(InterPro)
Clacu09g2177 1073 Pfam Leucine Rich Repeat 581 601 IPR001611 GO:0005515(InterPro)
Clacu09g2177 1073 Pfam Leucine Rich Repeat 609 627 IPR001611 GO:0005515(InterPro)
Clacu09g2177 1073 Pfam Leucine Rich Repeat 415 434 IPR001611 GO:0005515(InterPro)
Clacu09g2177 1073 Pfam Leucine Rich Repeat 557 577 IPR001611 GO:0005515(InterPro)
Clacu09g2177 1073 Pfam Leucine Rich Repeat 368 389 IPR001611 GO:0005515(InterPro)
Clacu09g2177 1073 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 843 1062 - -
Clacu09g2177 1073 ProSitePatterns Protein kinases ATP-binding region signature. 775 798 IPR017441 GO:0005524(InterPro)
Clacu09g2177 1073 FunFam Putative LRR receptor-like serine/threonine-protein kinase 754 842 - -
Clacu09g2177 1073 ProSitePatterns Serine/Threonine protein kinases active-site signature. 887 899 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g2177 1073 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 208 422 - -
Clacu09g2177 1073 SUPERFAMILY Protein kinase-like (PK-like) 760 1048 IPR011009 -
Clacu09g2177 1073 Gene3D Ribonuclease Inhibitor 206 332 IPR032675 -
Clacu09g2177 1073 Gene3D Phosphorylase Kinase; domain 1 748 842 - -
Clacu09g2177 1073 Gene3D Transferase(Phosphotransferase) domain 1 843 1065 - -
Clacu09g2177 1073 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Clacu09g2177 1073 SUPERFAMILY RNI-like 324 665 - -
Clacu09g2177 1073 Gene3D Ribonuclease Inhibitor 434 692 IPR032675 -
Clacu09g2177 1073 Pfam Leucine rich repeat 463 522 IPR001611 GO:0005515(InterPro)
Clacu09g2177 1073 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515(InterPro)
Clacu09g2177 1073 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 526 692 - -
Clacu09g2177 1073 SMART serkin_6 769 1045 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g2177 1073 SMART LRR_typ_2 554 578 IPR003591 -
Clacu09g2177 1073 SMART LRR_typ_2 414 437 IPR003591 -
Clacu09g2177 1073 SMART LRR_typ_2 627 650 IPR003591 -
Clacu09g2177 1073 SMART LRR_typ_2 341 365 IPR003591 -
Clacu09g2177 1073 SMART LRR_typ_2 148 172 IPR003591 -
Clacu09g2177 1073 SMART LRR_typ_2 509 532 IPR003591 -
Clacu09g2177 1073 SMART LRR_typ_2 389 413 IPR003591 -
Clacu09g2177 1073 ProSiteProfiles Protein kinase domain profile. 769 1048 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g2177 1073 Pfam Protein kinase domain 772 976 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g2177 1073 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 34 188 - -
Clacu09g2177 1073 PANTHER OS04G0122200 PROTEIN 439 1047 IPR051809 -
Clacu09g2177 1073 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 431 525 - -
Clacu09g2177 1073 Gene3D Ribonuclease Inhibitor 333 433 IPR032675 -
Clacu09g2177 1073 SUPERFAMILY RNI-like 87 430 - -
Clacu09g2177 1073 ProSiteProfiles Leucine-rich repeat profile. 511 532 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1382 Clacu-Chr1:25137418 Clacu09g2177 Clacu-Chr9:36499694 8.00E-92 dispersed
Clacu09g0984 Clacu-Chr9:9259670 Clacu09g2177 Clacu-Chr9:36499694 6.80E-91 dispersed
Clacu09g2177 Clacu-Chr9:36499694 Clacu10g0808 Clacu-Chr10:13816678 7.50E-66 dispersed
Clacu09g2177 Clacu-Chr9:36499694 Clacu06g1822 Clacu-Chr6:28774407 2.40E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73851 PF00069 Pkinase 9.20E-36 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2177 - - - 0.0