Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2243 ATGACAGCCATTGCAGTTCACCAGTTTGCTCAGTGCATCACTTGCCATGCTTGGAGCCCTGACCACTCCATGGTTGCATTTTGTCCAAACAATAATGAAGTTCACATTTATAAATCATCACAAGACAACTGGGAGAGAGTACATGTTCTTCAAAAGCATGATCAGCTTATCTCTGGGATAGACTGGAGTGTTAGGTCAAACAGAATTGTGACTGCATCTCATGATCGGAATTCGTATGTTTGGAACCTTGAAGGATCGGAGTGGGTACCAACTCTTGTCATTCTTAGACTAAACCGTGCTGCACTCTGTGTTCAGTGGAGTCCAAAAGAAAACAAGTTTGCTGTTGGGAGTGGGGCAAAAACTGTTTGCATCTGCTACTATGAACAAGAGAACAATTGGTGGGTCAGTAAGCTTATCAGAAAAAGACATGATTCTTCTGTGACAAATGTTGCTTGGCATCCCAATAATCTGCTTCTTGCAACAACCTCAACGGATGGAAAATGTCGAATCTTTTCCACCTTCATTAAAGGTGTTGACACAAAGGATTCAAGAGCTGGCGCATTTTCGGATTCAAAATTTGGAGAGTTAATTGTTCAGCTTGATCTCTCATTCTCTTGGGCATTTGGCGTAAAGTGGTCACCAAGTGGCAATACCTTAGCTTATGCAGGTCACAATTCGATGATTTACTTCGTAGATGAAGTTGGTCCTTCTCCTCTAGCCCAGAATGTTGCATTCCGAGATTTGCCTCTTCGTGATATACTTTTTGTTTCTGAGAGAATGGTTATAGGTGTAGGATTTGATTGCAATCCTATGGCTTTTGCTGCTGATGAAAGAGGGATCTGGAGCTTTGTAAGATTTCTTGGTGAGAGGAAAACAGCGTCAGGTTCAAAATATGGATCCCAGTTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCAAGGCAAGGCGTTGGAAATGATTCAGTTGAATCTTCAAGATTGCGCGGATGTGTCCACGAGAATTGTATAAGAGCCAGGGGTTTCCACTATAAAGCGGTTCAGCACTTCAGGTTTGTTAAAATGAAGAGATTGTTCAACTTCTTGTTCACAAATCTTTATGTTTATGTCTGGAAAATGATTGCAACTTATGAAAAGGCTGCTTTTAAATCAAAGCTATCTGCCCTGACCTTACAGAATCTTGCTCTTGGAACTTGGCACTTGGCACAGGCACAGTCACGTGCTTTGTATATTATAGCAGCTGCTTCTTCCTTCAGTTTTCTCTGTGCTCTGTACTCAGCGGCGAATATGCTATCCACACTGCAACCCCCTCGCTGCTCTCTTTCTCGCTTCCCTCTCCATCTTCCCTCCAAACCATTCTTCTTTCACTCCAAACAAACCCAACTTTCATCTTCACATCCCATTCCCAATTCCACTCTCACAGACCAATTTCCCACTTCCATTTCTTCCCAATCCCTTCACTCCCAAATTCTCTCCATCCGCCATTCCCTCCTTTCCCGCCAAATCACTGCCACCCAACTCGCCGAGTCCTATCTCAGTCGCCTCCGAGCTTTGGAGCCTCACCTCAAGTCATTTCTCTACGTCTCTGACACCGTCCTCTCTGATGCCCGTGAGATTGATGACAAAATTCACAGAAATGAGGAGCTGGGTCCTTTGGCTGGGGTGCTTGTGGGCGTTAAGGACAATATTTGTACTGCGGGTATGCCTTCCACTGGTGGGTCTCGGATTCTTGATGGGTATCGGCCACCATTTGATGCTACGGCTGTGAAGAGAATCAAGGAGTTGGGTGGGATTGTGGTTGGGAAGACTAATTTGGATGAATTTGGCATGGGTAGTTCTACTGAAGGCTCTGCTTTCCAGGTGACTGCAAATCCGTGGGATTTGAGTAGAGTACCGGGAGGATCATCAGGAGGGTCTGCTTCAGCTGTTTCTGCTAGGCAGTGTGTGGTGTCATTGGGAAGTGATACAGGTGGAAGTGTGCGGCAGCCAGCATCTTTTTGTGGTGTTGTTGGCTTGAAACCAACCTATGGTCGTGTCTCAAGATTTGGACTTATGGCCTATGCTTCATCGCTTGATGTTATTGGCTGCTTGAGTACAACAGTTGCTGATGCTGGGATTCTTCTACATGCAATTTCTGGTCACGATACACTTGATGCCACTAGTAGTAAACGAGAGGTTCCTGATTTCACATCGCAATTTTCTGCTGTTGATTCATTGGAGTCTAAACCCTTAAAAGGATTGAGGATTGGCCTAATTCGTGAAACCCTTGATAATGGCGTTGATGGTCAAGTAAATTCTGCTATCCGTGCTGCAGCTTCACATCTAGAAGAACTAGGATGTTCCATAAATGAGGTATCACTGCCATCATTCTCTCTTGGGTTGCCTGCGTATTATATTCTTGCATCATCTGAATCATCTTCAAACTTAGCTCGATATGATGGTGTCAGATATGGAAATCAAGCTGTTGCTGATGAGTTAACTGGTCTTTATGAAAATTCCCGAGCAGCAGGATTTGGTTCAGAGGTTAAAATGAGAATTTTGATGGGAACATATGCTCTCTCAGCTGGTTATTATGATGCTTACTACAAGCGTGCTCAGCAGGTGAGAACCATTATTCAGAAAAGCTTCAGAGCAGCATTAGATGAAAATGACATCTTAATATCACCTGCTGCTCCATCTGCCGCTTATAAAATTGGTGAAAAGGTGGACGATCCATTGGCAATGTATGCCGGTGACATCATGACTGTCAATGTTAACTTAGCTGGACTACCTGCGTTGGTTTTGCCTTGTGGATTTGTTCAAGATGGGTCCTCTAACCTTCCTGTTGGCCTTCAAATGATTGGTGCAGCTTTTGATGAGGGTAAACTTCTTAAAGTGGGACACATCTTTGAGCAAACTCTTGCAGACTGCAGATTTGTTCCACCCGTCCTAGCTGATGACATTAGTCTACAAGATCGCTGTCCCTTTGGAATCTCGGTCAATTCATTGTTCCGATCTATTCCATCTGTTCACGGACGGATCTCCGGTCGTTCTGTACTTCTCCGACAGCAGATATTGAAAAAGATGTCGGGCCAAAGCCAGCGTTTGAATGTGGTTCCGACAGTTACAATGCTTGGAGCGATGAAAGCTCGTCTTGTTGGTGCAACCAGAGGTCATGCTCTTCTCAAAAAGAAGAGTGATGCTTTGACCGTTCAGTTCCGTCAGATACTCAAGAAGATTGTCACAGCTAAGGAATCAATGGGGGATGTCATGAAGACATCTGCATTTTCTCTCACCGAAGCAAAATATGTTGCTGGTGACAATATCAAGCATATTGTCCTTGAGAATGTCCAAAGTGCAGCTATCAAGATTCGATCTCGGCAGGAGAATATAGCTGGTGTAAAGCTCCCAAAATTTGAACATTATTCTGATGGTGAGACTAAAAATGATCTCACAGGGTTAGCTAGGGGTGGACAACAGATCCAGCTGTGTCGGGGCGCCTATGTAAAGGCAATTGAGGTTCTTGTTGAGCTTGCCTCACTCCAGACGTCATTTTTGACTCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTCAACGCTCTAGAGAATGTTGTGAAGCCAAGGATCGAGAATACTATAAGTTACATTAAGGGAGAATTGGACGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATTCAGGGTTATAAGAGAAGGGAAATTGAGAAACAACGTGCCAATGCTAAGCTATTTGCTGAGGAACAACTTGCTGAGAAGATATCTTTGCAAAAGGGTGTCTCCATAAGTTCAGCTCACAATTTATTGTCTGCAGCTGCTGAGAAGGATGAGGATATTATTTTCTGA 3846 43.92 MTAIAVHQFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSSQDNWERVHVLQKHDQLISGIDWSVRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDTKDSRAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGNTLAYAGHNSMIYFVDEVGPSPLAQNVAFRDLPLRDILFVSERMVIGVGFDCNPMAFAADERGIWSFVRFLGERKTASGSKYGSQFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCIRARGFHYKAVQHFRFVKMKRLFNFLFTNLYVYVWKMIATYEKAAFKSKLSALTLQNLALGTWHLAQAQSRALYIIAAASSFSFLCALYSAANMLSTLQPPRCSLSRFPLHLPSKPFFFHSKQTQLSSSHPIPNSTLTDQFPTSISSQSLHSQILSIRHSLLSRQITATQLAESYLSRLRALEPHLKSFLYVSDTVLSDAREIDDKIHRNEELGPLAGVLVGVKDNICTAGMPSTGGSRILDGYRPPFDATAVKRIKELGGIVVGKTNLDEFGMGSSTEGSAFQVTANPWDLSRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCLSTTVADAGILLHAISGHDTLDATSSKREVPDFTSQFSAVDSLESKPLKGLRIGLIRETLDNGVDGQVNSAIRAAASHLEELGCSINEVSLPSFSLGLPAYYILASSESSSNLARYDGVRYGNQAVADELTGLYENSRAAGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIQKSFRAALDENDILISPAAPSAAYKIGEKVDDPLAMYAGDIMTVNVNLAGLPALVLPCGFVQDGSSNLPVGLQMIGAAFDEGKLLKVGHIFEQTLADCRFVPPVLADDISLQDRCPFGISVNSLFRSIPSVHGRISGRSVLLRQQILKKMSGQSQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVTAKESMGDVMKTSAFSLTEAKYVAGDNIKHIVLENVQSAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRIENTISYIKGELDELEREDFFRLKKIQGYKRREIEKQRANAKLFAEEQLAEKISLQKGVSISSAHNLLSAAAEKDEDIIF 1281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37228485 37244790 + ClG42_09g0224300.10 Clacu09g2243 258551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2243 1281 ProSitePatterns Amidases signature. 632 663 IPR020556 -
Clacu09g2243 1281 NCBIfam V-type ATP synthase subunit D 1029 1231 IPR002699 GO:0046961(InterPro)
Clacu09g2243 1281 NCBIfam Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA 494 966 IPR004412 GO:0006412(InterPro)|GO:0030956(InterPro)|GO:0050567(InterPro)
Clacu09g2243 1281 Gene3D Amidase signature (AS) domain 485 969 IPR036928 -
Clacu09g2243 1281 Gene3D - 1020 1218 - -
Clacu09g2243 1281 ProSitePatterns Trp-Asp (WD) repeats signature. 69 83 IPR019775 -
Clacu09g2243 1281 PANTHER TRANSAMIDASE 473 965 IPR000120 GO:0003824(InterPro)
Clacu09g2243 1281 SUPERFAMILY Amidase signature (AS) enzymes 488 973 IPR036928 -
Clacu09g2243 1281 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 91 IPR001680 GO:0005515(InterPro)
Clacu09g2243 1281 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 84 - -
Clacu09g2243 1281 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 172 IPR001680 GO:0005515(InterPro)
Clacu09g2243 1281 Pfam Amidase 506 956 IPR023631 -
Clacu09g2243 1281 Pfam ATP synthase subunit D 1037 1228 IPR002699 GO:0046961(InterPro)
Clacu09g2243 1281 Hamap Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 492 967 IPR004412 GO:0006412(InterPro)|GO:0030956(InterPro)|GO:0050567(InterPro)
Clacu09g2243 1281 FunFam V-type proton ATPase subunit D 1021 1218 - -
Clacu09g2243 1281 Pfam WD domain, G-beta repeat 45 82 IPR001680 GO:0005515(InterPro)
Clacu09g2243 1281 Pfam WD domain, G-beta repeat 141 171 IPR001680 GO:0005515(InterPro)
Clacu09g2243 1281 SUPERFAMILY WD40 repeat-like 11 267 IPR036322 GO:0005515(InterPro)
Clacu09g2243 1281 FunFam Actin-related protein 2/3 complex subunit 4 349 - -
Clacu09g2243 1281 SMART WD40_4 87 126 IPR001680 GO:0005515(InterPro)
Clacu09g2243 1281 SMART WD40_4 2 38 IPR001680 GO:0005515(InterPro)
Clacu09g2243 1281 SMART WD40_4 132 172 IPR001680 GO:0005515(InterPro)
Clacu09g2243 1281 SMART WD40_4 43 82 IPR001680 GO:0005515(InterPro)
Clacu09g2243 1281 SMART WD40_4 193 232 IPR001680 GO:0005515(InterPro)
Clacu09g2243 1281 Gene3D - 4 349 IPR015943 GO:0005515(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2243 K02433 - csv:101212627 995.727