Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu09g2250 | ATGCTCTCTTTTTTAGCTGCAATGCTAATAATATCCATTGTTCTAGTCTTGAGGAGCAATAAGAGAAGCAAAAATATACCACCTGGGCAAATGGGTCTTCCTTGGATTGGCGAAACAATGGCTTTTTACAAAGCCCAACGTAAAAACAGAGTATTTGAAGACTTTGTTAGGCCTCGAGTGGCTAAACATGGCAAAATCTTCAAAACAAGCTTAATGGGATCTCCAACAGTGGTTGTAAATGGAGCTGAAGCCAATCGATTTTTCTTGTCAAATGAGTTTAAGTTAGTGGTGAGTTCATGGCCATCGGGTTCTGTTCAGTTGATGGGTGAAGAATGCATTATGCAAAAGCAAGGTGAAAGGCACAGAATTGTGCGTGCTCTTATTGCTGCAAGTCTTTCTAGTTCGAGTCTTGAAGTTATGATGCCTAAATTGTGCAATACAATTAAGGTTTATTTGGAAACTAAATGGGTTGGTTGTGACACAATTGGTCTATTCCATTCGGCAAAAGTATTGACTTTTACCATAGTGTTTGAGTGTTTGATGGGTATTAAAGTGGAGCCACGTGTGTTGATGACATTTGAGAGAGTTTTGGAGGGTGTTTTTGTACCACCGCTCAGGTTTCCAGGCACAAGGTTTTCAAGAGCCAAGAAAGCAAGGTTGGAGATAGAGAAAATGCTAAGGGAAGTGGTGAGAGAGAAGAGGAGGGGAATTGAAGGAAAGTTAGAAGAAGAAGAAGAAGAAGAATGTGGGTCATTGCTTTCAAGGATGGTGAGAGCAATGATAAGAGGGGAGATCAATGAAACGGAAGTCATAGACAATGTGGTTTTGCTTGTTTTTGCAGCTCATGATACAACTTCCTTTGCCATTGCCATGACTTTCAAGATGTTAGCTCAACATTCAAACTGCTACTCACTTCTTCTCCAGGAACACACTGACATAGTGAGAAGCAAGGGGCCAAGCCAGAATTTGACGATGGAAGATATAAAGAAGATGAAATATACTTGGCAAGTAGCTCGTGAGAGCATTAGACTGTTTCCTCCTATATTTGGTTCTTTCAGGAAAGCCATTTCAGACATTGAATATGAGAGATTTTTCATTCCCAAAGGATGGAAGGTGAAAATTTCAATAAATTCTTCTGCTGTTTCTTTACATCAGTTGATATATCCTGCAGTAAATTGTTGTCCAGAAATGACCATCATTTTACCTCGAATCATTTTGGTTGCATGGCAGGTATTGTGGACGACGTATGGAACACATTACGAAGAAGAGTACTTTGAAGATCCATTGAGTTTCAAGCCAAGCAGATTTGAGGAACCTGTTTCTCAGTATGTTTATGTTCCATTTGGAGGAGGGCCAAGAGCTTGTGCAGGCTACCAGCTGGCGAAATTGAACATCCTCATCTTTATACATTTGGTTGTAACTCGTTATGACTGGAGCTTAGTCCATCCAGATGAGCCAATCATAATGGATCCTCTCCCTGTCCCTTCTCATGGAATGCCAATTAAGATTTCTCCAAAATCAGAAGTTTGTCCCAATGTTCACCAAATGTAA | 1551 | 40.23 | MLSFLAAMLIISIVLVLRSNKRSKNIPPGQMGLPWIGETMAFYKAQRKNRVFEDFVRPRVAKHGKIFKTSLMGSPTVVVNGAEANRFFLSNEFKLVVSSWPSGSVQLMGEECIMQKQGERHRIVRALIAASLSSSSLEVMMPKLCNTIKVYLETKWVGCDTIGLFHSAKVLTFTIVFECLMGIKVEPRVLMTFERVLEGVFVPPLRFPGTRFSRAKKARLEIEKMLREVVREKRRGIEGKLEEEEEEECGSLLSRMVRAMIRGEINETEVIDNVVLLVFAAHDTTSFAIAMTFKMLAQHSNCYSLLLQEHTDIVRSKGPSQNLTMEDIKKMKYTWQVARESIRLFPPIFGSFRKAISDIEYERFFIPKGWKVKISINSSAVSLHQLIYPAVNCCPEMTIILPRIILVAWQVLWTTYGTHYEEEYFEDPLSFKPSRFEEPVSQYVYVPFGGGPRACAGYQLAKLNILIFIHLVVTRYDWSLVHPDEPIIMDPLPVPSHGMPIKISPKSEVCPNVHQM | 516 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 37306774 | 37309029 | + | ClG42_09g0225000.10 | Clacu09g2250 | 258558 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu09g2250 | 516 | SUPERFAMILY | Cytochrome P450 | 27 | 504 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g2250 | 516 | PRINTS | P450 superfamily signature | 446 | 455 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g2250 | 516 | PRINTS | P450 superfamily signature | 455 | 466 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g2250 | 516 | PRINTS | P450 superfamily signature | 336 | 347 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g2250 | 516 | PRINTS | P450 superfamily signature | 280 | 297 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g2250 | 516 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 448 | 457 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Clacu09g2250 | 516 | Gene3D | Cytochrome P450 | 16 | 506 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g2250 | 516 | PANTHER | CYTOCHROME P450 26 | 25 | 483 | - | GO:0004497(PANTHER)|GO:0005783(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0051777(PANTHER) | |
| Clacu09g2250 | 516 | Pfam | Cytochrome P450 | 27 | 378 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g2250 | 516 | Pfam | Cytochrome P450 | 410 | 492 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g2250 | 516 | CDD | CYP90-like | 59 | 505 | - | - | |
| Clacu09g2250 | 516 | Coils | Coil | 215 | 247 | - | - | |
| Clacu09g2250 | 516 | PRINTS | E-class P450 group I signature | 455 | 478 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g2250 | 516 | PRINTS | E-class P450 group I signature | 60 | 79 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g2250 | 516 | PRINTS | E-class P450 group I signature | 414 | 438 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g2250 | 516 | PRINTS | E-class P450 group I signature | 445 | 455 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu09g2250 | 516 | PRINTS | E-class P450 group I signature | 269 | 286 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu06g1515 | Clacu-Chr6:26053759 | Clacu09g2250 | Clacu-Chr9:37306774 | 1.40E-64 | dispersed | |
| Clacu09g2250 | Clacu-Chr9:37306774 | Clacu11g0638 | Clacu-Chr11:6110154 | 1.00E-44 | dispersed | |
| Clacu09g2250 | Clacu-Chr9:37306774 | Clacu05g2182 | Clacu-Chr5:30441181 | 8.60E-52 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu09g2250 | - | - | - | 0.0 |