Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2259 ATGGTATTGCCACCGTCCAATCCATCCTTATCCATACGTTCTGGGCTCTACGAATGGCATTCATCGAGTAGGAATGCAAAAAGTCTCTATCCTCGATCTGATTCTGGTTACTTTATGGTAGCTGGTGGTGTCGGTTGTTCTGGTTTGGTGATTGAGTTTTTGGTTCAGGTTTTGGGATTGCAGGTGGGGAAGTGTATGAGGGATTTGATTTGGATTTCGTCTTCACTGTCTCCAACCTGGTTTGAGACTTTAAGGAAATGCAGACCGGTCATCAATTCTGCAGAATTGGACTTTTTCTCTGAATACGGCGATGCCAACAGATTCAAAGTTCGCGAAGTTATTGGAAAGGGGAGTTATGGTGTGGTTTGTTCAGCTGTTGACACTCTCACTAATGAAAAAGTGGCAATAAAGAAGATACACGATATTTTTGAACATGTATCTGATGCTGCCCGTATTCTTCGTGAGATAAAGCTGCTCAGGCTTCTACGTCATCCTGATATTGTTGAAATTAAACACATTATGTTACCACCTTCTCGTAGGGGGTTCAAAGATATTTTTGTTGTGTTTGAGTTGATGGAATCAGATTTGCATCAAGTCATCAAGGCCAACGATGATTTAACAAAAGAGCACTATCAATTTTTCCTTTATCAGCTACTCCGTGCGCTGAAATATATTCACACAGCAAATGTCTACCATCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGCAAACTCAAAATCTGTGATTTTGGATTGGCTAGAGTTGCTTTTAGTGACACCCCAACTACAATATTTTGGACGGACTATGTTGCTACTAGATGGTATAGGGCTCCAGAGCTATGTGGTTCTTTCTTCTCTAAGTATACTCCTGCCATTGACATTTGGAGTATTGGCTGCATATTTGCTGAAGTACTGACCGGGAAACCACTTTTTCCTGGTAAAAATATTGTTCATCAGCTTGATTTGATGACAGATCTCCTTGGAACACCGTCATTGGATACCATTTCTCGGGTAAGAAATGAAAAGGCCAGGAGGTACTTAACTAGTATGAGGAAGAAGCAGCCCATACCCTTTTCTCAGAAGTTCCCTAATGCTGATCCTGTAGCCCTGCAATTGCTACAACGATTGCTTGCATTTGATCCAAAGGATCGACCTACTGCTGAAGAGGCTTTGGCAGATCCTTACTTTAAGGGGCTGGCAAAAGTTGAGAGGGAACCTTCTTGCCAGCCAATCTCAAAGGTGGAGTTTGAATTTGAAAGGAGAAAGGTCACAAAGGATGACATTCGCGAGCTAATATTCCTTGAGATACTAGAATACCATCCTCAACTGCTAAAAGACTACTTAAATGGAACTGAGAGATCAAATTTTCTTTATCCAAGTGCACTAGATCAGTTCAAAAAGCAATTTGCTCATCTTGAAGATAATGGAGGGAAAAGTGGACCAGTTTATCCTTTAGAAAGAAAACATGCATCTCTTCCTAGGTCTTCAGTACAGTCAAATACCATTCCTCCTAAAGCTACATCAAATATTGTTTCCTTTAAAGACCGATATGCGCCAGCAGGTTCGTTCAGCAGTCAGCATTTCAGAGATCCAGCAGCGCAGAGGATTGCTGCTGCTCAAGCCAAGCCTGGAAGAATCTCGGGCCCGGTCGTGCCATATGAAAGTGGAAGTATTGTTAAAGATGCCTACGACCCGAGAATGTTAATTAGAAGTGCCTTCCCTTCTCATGCTATCCATCCAACATATTACTATCAGCAATCTTGCGGCCAAAATGAAGAAAGATCAGCAACGGGGGCTGAACAGGACACATCCTTGCAATGTAAACAATCCCCTCAATGTGGAATGGCTGCCAAATTAGCAGGAGATACAGCTGCTACTGGTGCTTTCTCAAATCCTTTCTTTATGGCGCGTGTAGGCATGCCCAAGATCGGAAACAATGACCGTGCTGCACGTTTGCAGGTAAGTGCTCAATATGATGCTGGAGCTGTTGCTGCTGCAACTACCACCACCCATCGAAACACTGGCACGGTCGAAATTCAGACTTTGAAACTCACTATCATCATATTGGCCATTGAAGAGGAAGCTGAGCTTATTGATGGATAG 2112 42.52 MVLPPSNPSLSIRSGLYEWHSSSRNAKSLYPRSDSGYFMVAGGVGCSGLVIEFLVQVLGLQVGKCMRDLIWISSSLSPTWFETLRKCRPVINSAELDFFSEYGDANRFKVREVIGKGSYGVVCSAVDTLTNEKVAIKKIHDIFEHVSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRGFKDIFVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNIVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPIPFSQKFPNADPVALQLLQRLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPISKVEFEFERRKVTKDDIRELIFLEILEYHPQLLKDYLNGTERSNFLYPSALDQFKKQFAHLEDNGGKSGPVYPLERKHASLPRSSVQSNTIPPKATSNIVSFKDRYAPAGSFSSQHFRDPAAQRIAAAQAKPGRISGPVVPYESGSIVKDAYDPRMLIRSAFPSHAIHPTYYYQQSCGQNEERSATGAEQDTSLQCKQSPQCGMAAKLAGDTAATGAFSNPFFMARVGMPKIGNNDRAARLQVSAQYDAGAVAAATTTTHRNTGTVEIQTLKLTIIILAIEEEAELIDG 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37358165 37363784 - ClG42_09g0225900.10 Clacu09g2259 258567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2259 703 SMART serkin_6 108 399 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g2259 703 Pfam Protein kinase domain 109 399 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g2259 703 FunFam Mitogen-activated protein kinase 100 201 - -
Clacu09g2259 703 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 107 438 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Clacu09g2259 703 ProSitePatterns MAP kinase signature. 143 246 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g2259 703 ProSiteProfiles Protein kinase domain profile. 108 399 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g2259 703 ProSitePatterns Protein kinases ATP-binding region signature. 114 138 IPR017441 GO:0005524(InterPro)
Clacu09g2259 703 Gene3D Phosphorylase Kinase; domain 1 123 445 - -
Clacu09g2259 703 SUPERFAMILY Protein kinase-like (PK-like) 105 403 IPR011009 -
Clacu09g2259 703 FunFam Mitogen-activated protein kinase 194 422 - -
Clacu09g2259 703 Gene3D Transferase(Phosphotransferase) domain 1 194 422 - -
Clacu09g2259 703 CDD STKc_TDY_MAPK 107 444 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1542 Clacu-Chr6:26356467 Clacu09g2259 Clacu-Chr9:37358165 3.30E-197 dispersed
Clacu07g0657 Clacu-Chr7:11992018 Clacu09g2259 Clacu-Chr9:37358165 7.00E-184 dispersed
Clacu07g1032 Clacu-Chr7:24757728 Clacu09g2259 Clacu-Chr9:37358165 6.00E-204 dispersed
Clacu08g1641 Clacu-Chr8:26159707 Clacu09g2259 Clacu-Chr9:37358165 1.20E-87 dispersed
Clacu09g2259 Clacu-Chr9:37358165 Clacu10g1175 Clacu-Chr10:24415100 6.20E-45 dispersed
Clacu02g1884 Clacu-Chr2:32334070 Clacu09g2259 Clacu-Chr9:37358165 2.00E-246 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73853 PF00069 Pkinase 1.00E-66 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2259 - - - 0.0