Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2269 ATGTCAAATGATGAAGGCAAAAATGTGTACCAGCAGTATGATCCATTCCAATACAACCAGTTGGATATGAACCGTTCGATCTTCCATCAACAAGCGGCGACGTTGGATCCTGCTTTGATGAGCTTCACTAACTTCTTCGATACCTCGTTGGATTACAACAGCCTGTCGAAGGCGTTCGACGTGTCGTGCTGTTCATCCGAAGTCATTTCTGCAGTGGACGACAGGTCGAAATCAAAGAAGGCTTCGACGACCACCCCAAATTCTTCAGTGTCGTCGTCGTCTAATGAAGCTGTAGTTGAAGAAGATTCAGTCAAGAGCAACAAAGAGGACATAAAAGGGTGCGAGAATAAAGATGAAGAAAAGTCTAAGAAACAGAACAGCATAACAAAAAAGAAAGAGAAACGGCAGAGGGAGCCCCGTTTTGCTTTCTTGACTAAGAGTGAGATTGATCACCTTGAAGATGGTTATAGATGGAGAAAATATGGTCAGAAAGCAGTTAAAAATAGTCCTTACCCAAGAAGCTACTATAGATGCACCAGCCAAAAATGTGTAGTGAAAAAACGAGTTGAAAGATCATATCAAGATCCATCTGTAGTGATTACTACATATGAAGGCCAACACAACCACCATTGTCCAGCTACACTCCGAGGCCATTCTGCAGGGATCATGTCGTCTCCATTCTATGCATCAGCATCAACATCGGTAACGGCAGCCTCGTCGGGGCCTACGCTTCCACAAGAACTCTTCTCACATTTGTTACCGACAAATAACTGCCAAACCGACCCGGCCTCGATGATGTACCAAAATCTAAGCCTTCAACAACACCTTCAAATGCCTGATCATTATGGTTTGTTGCAAGATTTGTTCACTCAAAAATAG 879 43.46 MSNDEGKNVYQQYDPFQYNQLDMNRSIFHQQAATLDPALMSFTNFFDTSLDYNSLSKAFDVSCCSSEVISAVDDRSKSKKASTTTPNSSVSSSSNEAVVEEDSVKSNKEDIKGCENKDEEKSKKQNSITKKKEKRQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGIMSSPFYASASTSVTAASSGPTLPQELFSHLLPTNNCQTDPASMMYQNLSLQQHLQMPDHYGLLQDLFTQK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37434207 37436012 + ClG42_09g0226900.10 Clacu09g2269 258577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2269 292 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 63 220 IPR044810 GO:0003700(InterPro)
Clacu09g2269 292 MobiDBLite consensus disorder prediction 101 139 - -
Clacu09g2269 292 Pfam WRKY DNA -binding domain 153 210 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g2269 292 SUPERFAMILY WRKY DNA-binding domain 145 212 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g2269 292 MobiDBLite consensus disorder prediction 74 139 - -
Clacu09g2269 292 FunFam WRKY transcription factor 57 138 212 - -
Clacu09g2269 292 MobiDBLite consensus disorder prediction 81 100 - -
Clacu09g2269 292 SMART WRKY_cls 152 211 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g2269 292 Gene3D WRKY domain 136 213 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g2269 292 ProSiteProfiles WRKY domain profile. 147 212 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2510 Clacu-Chr1:35464939 Clacu09g2269 Clacu-Chr9:37434207 1.80E-42 dispersed
Clacu06g0428 Clacu-Chr6:5063751 Clacu09g2269 Clacu-Chr9:37434207 4.90E-37 dispersed
Clacu08g1185 Clacu-Chr8:21832800 Clacu09g2269 Clacu-Chr9:37434207 9.80E-37 dispersed
Clacu09g0497 Clacu-Chr9:4297644 Clacu09g2269 Clacu-Chr9:37434207 1.20E-31 dispersed
Clacu09g2269 Clacu-Chr9:37434207 Clacu10g1153 Clacu-Chr10:24150158 3.30E-32 dispersed
Clacu02g1886 Clacu-Chr2:32374989 Clacu09g2269 Clacu-Chr9:37434207 2.20E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48406 PF03106 WRKY 5.40E-25 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2269 - - - 0.0