Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2270 ATGAGGCGTTCTCAGAATGTTCAAAGCACAAATTGGGTGCAAGGACCTATGAGTTTGGACGAGTTCAAGTATGGGTTCCCCTCTGGTGGATTACCATCTATATCAAATAAATGGTGGGGAGGTAGCTGTCCAGATGAAATCAATAATGAAGAAGATGACAAACATCACTTCAAAGTAGTAAATGATGGTTTCACATCTTTAATAGACCAAGATAAATCTGAAAGTATAGAGGAGGATCTCCAAGCTGATCTTCAGGGGACGCGGCTTCTGACAGCTTTGAGAAGAAGAAGTGTGGAGAGAGGACGAGAAGGGCAACTGCTTTGGTCGTGGTACTCCGCCCTTCATAAGGTGCATATTCCCATCCTCCATAACAAGGAGTATAAAGTAGCCTATGACCCTGTTGGCCAAATTTTAGATGTAGAAAAAGGAAGAAAAAAGGTGGATGAAGGGAAACCGACAATATTTGGGCCAGAGTTGGAGGGACCCAGTGGCCCACTTGAGGGGCCATCCTTAAACAACAGCCCATGCCTATTGCTCCCTGCACAGATGACCCGTTTCCGTCAGGTCGATATTGGGCTATCTATGCTTATTGGGTCTCTATTGGTTAAAATAGAAGCCCTTTCTCTGCTTCTGTGGGATCTTAAAGAGGAAGATCAAGGGGCTATGTCATCTGGAAGTAGTAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTATTAATTCTCGGTATCTTATCTGTATGGGTGATGTTTAGAAGAAAAACAAGGAGATCCCCAGAAAATTTCTCAATTTCTCAAATACCAAATGTCTCGAAGGATATTAAGGTGGACAGAATCGCGACTCAATCTGCCCACCACAATCATCTCGAGAACCTTTATCTTTCCATTCATGATAAATCAAGTGAGAAGAACTCAGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCTAGTGATCCTGATAACATAAGCCAATGCAGCTCCAATTATCATCATGAAAGAGTTTTCAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATGTCCTATGGAGGGTATGGAGGCCTTGTGACTGCCTCTCCTCTTGTTGGCCTGCCTGAAATTTCGCATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTAGAATTTGCGACAAATCGTTTCGCTGCAGACAATGTGCTTGGGGAAGGGGGTTATGGGGTCGTCTACAAAGGCAGACTGATAAATGGAACTGAGGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATCGGTCATGTAAGACACAAGAACCTTGTACGGCTCCTCGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGGAACTTAGAGCAATGGTTACATGGGGCTATGCGGCAACATGGCACCCTTACTTGGGAGGCTCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCATATTTACATGAAGCAATTGAACCAAAGGTTGTCCACAGAGACATAAAATCGAGCAACATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAGCTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGGTATGTGGCGCCAGAATATGCCAACACTGGCTTGTTAAACGAGAAGAGTGACATTTATAGCTTTGGTGTTCTCCTTCTAGAAGCAATTACGGGAAGGGACCCAGTGGACTATGGTCGTCCTGCTAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTTGGCACAAGGAGAGCTGAGGAAGTTATTGACCCAAGTCTTGAAACTAAACCCGCTACACGAGCATTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACCCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCATCACGTGAGGATCGTCGGAGCCAGAAGAGCAGCACAGCAAACTCAGAGATCGAATCCAGTCAAGGCGAGGTCGGAAGTAAACCAGGTGAATCACAAAACAGACCCGTAAATGCATGA 2193 44.32 MRRSQNVQSTNWVQGPMSLDEFKYGFPSGGLPSISNKWWGGSCPDEINNEEDDKHHFKVVNDGFTSLIDQDKSESIEEDLQADLQGTRLLTALRRRSVERGREGQLLWSWYSALHKVHIPILHNKEYKVAYDPVGQILDVEKGRKKVDEGKPTIFGPELEGPSGPLEGPSLNNSPCLLLPAQMTRFRQVDIGLSMLIGSLLVKIEALSLLLWDLKEEDQGAMSSGSSSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSISQIPNVSKDIKVDRIATQSAHHNHLENLYLSIHDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSMSYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFAADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPSLETKPATRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSTANSEIESSQGEVGSKPGESQNRPVNA 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37442004 37450084 - ClG42_09g0227000.10 Clacu09g2270 258578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2270 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g2270 730 Coils Coil 435 455 - -
Clacu09g2270 730 ProSitePatterns Protein kinases ATP-binding region signature. 421 444 IPR017441 GO:0005524(InterPro)
Clacu09g2270 730 PANTHER OS01G0323000 PROTEIN 227 710 IPR052232 -
Clacu09g2270 730 Pfam Protein kinase domain 418 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g2270 730 FunFam Putative receptor-like serine/threonine-protein kinase 491 701 - -
Clacu09g2270 730 Gene3D Transferase(Phosphotransferase) domain 1 491 705 - -
Clacu09g2270 730 MobiDBLite consensus disorder prediction 684 730 - -
Clacu09g2270 730 CDD STKc_IRAK 421 687 - -
Clacu09g2270 730 ProSiteProfiles Protein kinase domain profile. 415 673 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g2270 730 SMART serkin_6 415 686 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g2270 730 SUPERFAMILY Protein kinase-like (PK-like) 399 692 IPR011009 -
Clacu09g2270 730 MobiDBLite consensus disorder prediction 684 703 - -
Clacu09g2270 730 FunFam Putative receptor-like protein kinase 397 490 - -
Clacu09g2270 730 Gene3D Phosphorylase Kinase; domain 1 397 490 - -
Clacu09g2270 730 MobiDBLite consensus disorder prediction 704 730 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1512 Clacu-Chr2:28586415 Clacu09g2270 Clacu-Chr9:37442004 1.20E-148 dispersed
Clacu06g0403 Clacu-Chr6:4823775 Clacu09g2270 Clacu-Chr9:37442004 8.60E-155 dispersed
Clacu08g1765 Clacu-Chr8:27093024 Clacu09g2270 Clacu-Chr9:37442004 1.30E-145 dispersed
Clacu09g2270 Clacu-Chr9:37442004 Clacu11g0675 Clacu-Chr11:6517974 2.60E-78 dispersed
Clacu02g1887 Clacu-Chr2:32381446 Clacu09g2270 Clacu-Chr9:37442004 1.80E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73854 PF00069 Pkinase 1.50E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2270 - - - 0.0