Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2278 ATGGCCGCGTCAGAGATGATGATGAAAAAGGGTGGTAGTGGACCACCGCCTTGCGCTGCTTGCAAGCTTCTGCGCCGGCGGTGTGCTCCGGACTGCGTTTTTGCTCCCTATTTCCCTTCCGATCAGCCTCACAAATTCTCAAGTGTTCACAAGGTTTTTGGAGCCAGCAATGTCAGCAAATTGTTGCAGGAGTTGCCAGAGCATCAAAGGAGTGATGCTGTGAGTTCAATGGTATACGAGGCAAATGCAAGGATTCGAGATCCGGTATACGGATGCGTGGGAACGATATCGTGTCTACAACGGGAAGTAGATGCATTGCAACAACAACTAGCAATGACACAGGCCCAGCTAGTTCAATTGAAAATGGGCCAATTTGCATCAACATCACAAGCATCATCTAGTACGGATGACCTCCTTCCTCCTCCGCCCAATATCAATGTGGGCGCATCACCATCCTTGTGGTCTTGCTAG 471 49.89 MAASEMMMKKGGSGPPPCAACKLLRRRCAPDCVFAPYFPSDQPHKFSSVHKVFGASNVSKLLQELPEHQRSDAVSSMVYEANARIRDPVYGCVGTISCLQREVDALQQQLAMTQAQLVQLKMGQFASTSQASSSTDDLLPPPPNINVGASPSLWSC 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37532957 37535194 + ClG42_09g0227800.10 Clacu09g2278 258586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2278 156 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Clacu09g2278 156 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 127 - -
Clacu09g2278 156 MobiDBLite consensus disorder prediction 131 156 - -
Clacu09g2278 156 Coils Coil 96 123 - -
Clacu09g2278 156 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1981 Clacu-Chr2:33308002 Clacu09g2278 Clacu-Chr9:37532957 1.30E-38 dispersed
Clacu07g0465 Clacu-Chr7:5665260 Clacu09g2278 Clacu-Chr9:37532957 6.00E-39 dispersed
Clacu09g2278 Clacu-Chr9:37532957 Clacu10g1381 Clacu-Chr10:26924184 7.60E-36 dispersed
Clacu02g1901 Clacu-Chr2:32536253 Clacu09g2278 Clacu-Chr9:37532957 3.10E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48408 PF03195 LOB 1.80E-43 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2278 - - - 0.0