Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2282 ATGGCGTCTTCGTCTTTAGGTTTCATCTTTGTTCTTTGTGCTGTTGCTTCCATCGTCGCCCACGTGATTGTTTTGTCTCAAGCTCAGAATTCAACTCTACCCCCCACCGATCCTGATCAAGCAAGAGCTCTGAATTCCATATTTCGACAATGGCGTATATCGGCTCCATCAGGGGCGTGGAATATAAGCGGGAATCTGTGCAGTGGGAGAGCTGTCGACACTACAACCCCCATCGATAGTAATGGAAACCTCAATCCTCTTATAAAATGTGATTGCTCAGCCAACAATGGTGCTACTTGCCTCATTACTCAACTGCACGTTTATGCGATAAATGTTGTTGGTGTACTCCCACCAGAGCTATGGACATTAACTTCCCTCACCTATCTGAAGCTGGATCAAAATTTCTTGACAGGAACATTATCTGCATCTGTTGGCAATCTCACAGAATTGCGAACCTTGAGCCTGGGCATTAATGCATTATCAGGGGAACTGCCGAAGGAACTTGGATCTCTTTCTAAACTAGAAGTATTGGCATTCGGGTCCAACAATTTCTCTGGTCCCTTACCGTCAGAGCTTGGAAGTCTTTCTATGTTAAGGGAGCTATACATTGATAGCTCTGGAGTTTCTGGTGGTATTCCTCCATCATTTTCAAGTCTGAGAAACTTGCAGACAGTATGGGCATCAGACAATGAATTCACTGGCAGAATACCTGATTTCATCGGGAGTTGGACAAGGCTCACATCTCTGAGGTTTCAAGGAAACTCTTTTACAGGTCCTATACCATCGACGTTTTCAAACTTGACATCTCTGACTGAGTTGAGAATAGGTGATTTATCCAATGGGAGCTCTTCTCTGGCATTCGTCAGTAATATGACATCTCTAACTATCCTGGTGTTGAGAAATAATAATATGACTGGTTCAATTCCATCCGACATTGGAGGATTTCGTAGACTTACCCAGCTGGACTTGAGCTTCAACAACTTGACAGGAGAGATTCCAAGCTCGCTTTTCAGTTTGAGTTCACTGTCACACTTGATTCTTGGAAATAATAAGTTAAATGGGACCCTACCTACACAGAAGAGTGCATCACTTCTAAATATAGACTTGTCATATAACGATTTATCAGGGAGCTTTCCTGCTTGGATCAACGAGCAAAACTTACAACTAAATTTAGTCGCCAACAATTTCACAATTGACAGTGCTAGTATCAGTGGTTTGCCTTCTGGATTGAATTGTCTTCAACGCAACTTTCCTTGTAATCGAGGTCGTCCAATATATTCTGATTTTGGGATCAAGTGTGGAGGTCCACAGATCAGAAGTTCATCAGGGATTTTGTTTGAAAGAGAAAATGAGACTCTCGGTCCTGCTACGTACTTTGTTACTGAGTCACAAAGGTGGGCCGTTAGTAATACTGGATACTTTACTGGGACCAACGATCCTCAATACACAGCCAATACGTTGTCTCAATTCCCAAACACCCTTGACACAGAACTTTTCCAGACACAGCGACTATCTGCTTCATCATTGAGATACTATGGACTAGGGCTTGAGAATGGCAACTACACTGTGAACCTTCATTTTGCAGAGCTAGCTTTCCCAGATTCAAATACATGGCAAAGCCGTGGGAGGCGTCTCTTTGATATATATATACAGGGAAATCGTGTGTTACAGAATTTTGATATTAGAAAGGAGGCAGGTGGGTCTTTCCTTGCTGTCAGAAAGAATTTTACGGCTGAAGTTACAGAAAACTTCCTGGAAATTCATCTCTTTTGGGCGGGGAAAGGTACTTGCTGCATACCTAAACAGGGTGATTTTGGACCCGCTGTTTCAGCCATCAGTGCTACCCCAGATTTTGTACCAACTGTCAGTAACGTTCCTCCAAGTACTAAGGAGAATAGAACAGGCCTAATCGTAGGGCTCGTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTATTGGCACAGTTTTCCTTGTTGTTCAGAGAAGGAAAACGCGTCGCGCCTATGAAGATGAAGAGCTCCTAGGAATAGACACTAGACCGTACACTTTTAGTTTTTCTGAATTAAGGAGTGCTACAAATGACTTTAATTCATCCAACAAACTTGGCGAGGGAGGATTTGGACCTGTTTACAAGGGAACATTAAATGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGCTACAATATCTGCAGTGCAACATCGTAACCTTGTGAAATTATATGGATGTTGCATTGAGGCCGATAAACGTCTCCTTGTTTATGAGTTTCTTGAAAACAAGAGTCTTGACCAAGCATTATTTGGACAAAAACATTTGATTATTGATTGGCCAACACGTTTTGAGATATGCGTGGGTGTAGCAAGGGGCCTCACTTACCTTCATGAGGAATCGAGGCTTCGCATAGTGCACAGAGATGTTAAGGCCAGTAACATCCTGCTTGATGGTAATCTGATTCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACCCGTGTTGCTGGGACAATTGGTTATCTTGCACCTGAGTATGCCATGCGTGGCCACCTTACGGAGAAGGCTGATGTCTTTGGATTTGGCGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCAAATTCAGACCCAAGCTTAGAGCAAGACAAAGTATATCTTCTCGAATGGGCATGGTACCTCCACGAAAACAACTGTGAACTTGAGATGGTGGATTCTGAATTATCAGAGTTCAGTAAGGAGGAAGTAAAAAGGGTGATCGGTGTAGCTCTTCTGTGTACTCAAACATCTCCAGCTCTTCGGCCATCGATGTCCCGTGTGGTGGCAATGCTGACTGGAGACATTGAAGTGGCCGCTGTAACTTCCAAACCAGGATACCTGACAGATTGGAAATTTGATGACATTACAAGCTTTATAGATACTCCATCAACTGAAGAACCTGATACTGGCCGTTATGCATCGACAAGTTCAAGTATCGTTGATACACATCGCTCACCAGCCAATGCTTCTGAACCAATGCTTCGTGGATTATTAGGAGAGGGTAGGTGA 3105 43.12 MASSSLGFIFVLCAVASIVAHVIVLSQAQNSTLPPTDPDQARALNSIFRQWRISAPSGAWNISGNLCSGRAVDTTTPIDSNGNLNPLIKCDCSANNGATCLITQLHVYAINVVGVLPPELWTLTSLTYLKLDQNFLTGTLSASVGNLTELRTLSLGINALSGELPKELGSLSKLEVLAFGSNNFSGPLPSELGSLSMLRELYIDSSGVSGGIPPSFSSLRNLQTVWASDNEFTGRIPDFIGSWTRLTSLRFQGNSFTGPIPSTFSNLTSLTELRIGDLSNGSSSLAFVSNMTSLTILVLRNNNMTGSIPSDIGGFRRLTQLDLSFNNLTGEIPSSLFSLSSLSHLILGNNKLNGTLPTQKSASLLNIDLSYNDLSGSFPAWINEQNLQLNLVANNFTIDSASISGLPSGLNCLQRNFPCNRGRPIYSDFGIKCGGPQIRSSSGILFERENETLGPATYFVTESQRWAVSNTGYFTGTNDPQYTANTLSQFPNTLDTELFQTQRLSASSLRYYGLGLENGNYTVNLHFAELAFPDSNTWQSRGRRLFDIYIQGNRVLQNFDIRKEAGGSFLAVRKNFTAEVTENFLEIHLFWAGKGTCCIPKQGDFGPAVSAISATPDFVPTVSNVPPSTKENRTGLIVGLVVGLGSVFFLIIGTVFLVVQRRKTRRAYEDEELLGIDTRPYTFSFSELRSATNDFNSSNKLGEGGFGPVYKGTLNDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFGQKHLIIDWPTRFEICVGVARGLTYLHEESRLRIVHRDVKASNILLDGNLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKVYLLEWAWYLHENNCELEMVDSELSEFSKEEVKRVIGVALLCTQTSPALRPSMSRVVAMLTGDIEVAAVTSKPGYLTDWKFDDITSFIDTPSTEEPDTGRYASTSSSIVDTHRSPANASEPMLRGLLGEGR 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37566657 37576032 - ClG42_09g0228200.10 Clacu09g2282 258590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2282 1034 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g2282 1034 MobiDBLite consensus disorder prediction 993 1017 - -
Clacu09g2282 1034 SUPERFAMILY L domain-like 102 407 - -
Clacu09g2282 1034 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 20 989 IPR051824 GO:0005886(PANTHER)
Clacu09g2282 1034 FunFam Putative LRR receptor-like serine/threonine-protein kinase 281 404 - -
Clacu09g2282 1034 Pfam Leucine Rich Repeat 245 267 IPR001611 GO:0005515(InterPro)
Clacu09g2282 1034 Pfam Leucine Rich Repeat 293 314 IPR001611 GO:0005515(InterPro)
Clacu09g2282 1034 Pfam Leucine Rich Repeat 317 339 IPR001611 GO:0005515(InterPro)
Clacu09g2282 1034 FunFam Os05g0263100 protein 41 280 - -
Clacu09g2282 1034 MobiDBLite consensus disorder prediction 993 1034 - -
Clacu09g2282 1034 CDD STKc_IRAK 701 965 - -
Clacu09g2282 1034 Gene3D - 429 616 - -
Clacu09g2282 1034 FunFam Leucine-rich repeat receptor-like protein kinase 665 770 - -
Clacu09g2282 1034 Gene3D Ribonuclease Inhibitor 283 418 IPR032675 -
Clacu09g2282 1034 Gene3D Ribonuclease Inhibitor 59 282 IPR032675 -
Clacu09g2282 1034 Pfam Malectin domain 430 612 IPR021720 -
Clacu09g2282 1034 SUPERFAMILY Protein kinase-like (PK-like) 678 997 IPR011009 -
Clacu09g2282 1034 Gene3D Phosphorylase Kinase; domain 1 657 770 - -
Clacu09g2282 1034 Pfam Protein tyrosine and serine/threonine kinase 698 962 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g2282 1034 FunFam Leucine-rich repeat receptor-like protein kinase 426 616 - -
Clacu09g2282 1034 ProSiteProfiles Protein kinase domain profile. 695 969 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g2282 1034 SMART serkin_6 695 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g2282 1034 Gene3D Transferase(Phosphotransferase) domain 1 771 974 - -
Clacu09g2282 1034 FunFam Putative LRR receptor-like serine/threonine-protein kinase 771 975 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1493 Clacu-Chr6:25861916 Clacu09g2282 Clacu-Chr9:37566657 9.00E-89 dispersed
Clacu07g1066 Clacu-Chr7:25214318 Clacu09g2282 Clacu-Chr9:37566657 6.20E-89 dispersed
Clacu09g2282 Clacu-Chr9:37566657 Clacu11g1918 Clacu-Chr11:30185620 6.80E-149 dispersed
Clacu09g2282 Clacu-Chr9:37566657 Clacu11g1916 Clacu-Chr11:30145850 8.30E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73855 PF07714 PK_Tyr_Ser-Thr 6.90E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2282 - - - 0.0