Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g2308 ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACACCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACACTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGATTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCCTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAACTAGAGGTGCAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCAAATAACAACAATAATCAGCAAGGCATTAGCGACATGGCCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCCCTCGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCACCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGTTTACTGTGCTTGGGAAAGAAGAAACCGAGGCCCCCGCCATCTACGCCAAACTACGGCGCCAGCTCGGGAAAAGGTGCATTGGACTGGCCGGACGATCTCCGGCTGCAAGATATAGGAATGGCACCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGCATTGGTGCGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGTAGTGTCGGATGAAGGCATTGGGGATCACAAGAAGTATGACATCAATAATAATGATAATAATAACAACAACAATAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCAGAAGGGCACCCCTTTCCATGGATAGGGCCAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGATACTCGTTAA 1149 49.43 MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGISDMAGAGGIKDFGSPLGFPSFQDLNLYGGDHLDLQQNVDGFMPHNDSLLCLGKKKPRPPPSTPNYGASSGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGATLVERDHLEEMYEAKPVVSDEGIGDHKKYDINNNDNNNNNNNNNASIKLQRPSPRRAPLSMDRANHPLTTAPQSTHSPFDTR 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37762287 37764407 + ClG42_09g0230800.10 Clacu09g2308 258616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g2308 382 MobiDBLite consensus disorder prediction 313 332 - -
Clacu09g2308 382 Gene3D - 31 89 - -
Clacu09g2308 382 MobiDBLite consensus disorder prediction 313 382 - -
Clacu09g2308 382 FunFam Myb family transcription factor 31 89 - -
Clacu09g2308 382 MobiDBLite consensus disorder prediction 333 350 - -
Clacu09g2308 382 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Clacu09g2308 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 189 IPR046955 GO:0003700(InterPro)
Clacu09g2308 382 MobiDBLite consensus disorder prediction 366 382 - -
Clacu09g2308 382 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677(InterPro)
Clacu09g2308 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Clacu09g2308 382 Pfam Myb-like DNA-binding domain 34 84 IPR001005 -
Clacu09g2308 382 Pfam MYB-CC type transfactor, LHEQLE motif 127 167 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0372 Clacu-Chr5:3194446 Clacu09g2308 Clacu-Chr9:37762287 2.80E-38 dispersed
Clacu07g0217 Clacu-Chr7:2546176 Clacu09g2308 Clacu-Chr9:37762287 1.60E-30 dispersed
Clacu09g2308 Clacu-Chr9:37762287 Clacu10g1325 Clacu-Chr10:26219895 2.70E-34 dispersed
Clacu02g1922 Clacu-Chr2:32774216 Clacu09g2308 Clacu-Chr9:37762287 2.30E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48410 PF00249 Myb_DNA-binding 2.10E-06 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g2308 - - - 0.0