Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu09g2308 | ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACACCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACACTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGATTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCCTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAACTAGAGGTGCAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCAAATAACAACAATAATCAGCAAGGCATTAGCGACATGGCCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCCCTCGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCACCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGTTTACTGTGCTTGGGAAAGAAGAAACCGAGGCCCCCGCCATCTACGCCAAACTACGGCGCCAGCTCGGGAAAAGGTGCATTGGACTGGCCGGACGATCTCCGGCTGCAAGATATAGGAATGGCACCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGCATTGGTGCGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGTAGTGTCGGATGAAGGCATTGGGGATCACAAGAAGTATGACATCAATAATAATGATAATAATAACAACAACAATAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCAGAAGGGCACCCCTTTCCATGGATAGGGCCAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGATACTCGTTAA | 1149 | 49.43 | MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGISDMAGAGGIKDFGSPLGFPSFQDLNLYGGDHLDLQQNVDGFMPHNDSLLCLGKKKPRPPPSTPNYGASSGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGATLVERDHLEEMYEAKPVVSDEGIGDHKKYDINNNDNNNNNNNNNASIKLQRPSPRRAPLSMDRANHPLTTAPQSTHSPFDTR | 382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 37762287 | 37764407 | + | ClG42_09g0230800.10 | Clacu09g2308 | 258616 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu09g2308 | 382 | MobiDBLite | consensus disorder prediction | 313 | 332 | - | - | |
Clacu09g2308 | 382 | Gene3D | - | 31 | 89 | - | - | |
Clacu09g2308 | 382 | MobiDBLite | consensus disorder prediction | 313 | 382 | - | - | |
Clacu09g2308 | 382 | FunFam | Myb family transcription factor | 31 | 89 | - | - | |
Clacu09g2308 | 382 | MobiDBLite | consensus disorder prediction | 333 | 350 | - | - | |
Clacu09g2308 | 382 | SUPERFAMILY | Homeodomain-like | 31 | 87 | IPR009057 | - | |
Clacu09g2308 | 382 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 8 | 189 | IPR046955 | GO:0003700(InterPro) | |
Clacu09g2308 | 382 | MobiDBLite | consensus disorder prediction | 366 | 382 | - | - | |
Clacu09g2308 | 382 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 32 | 87 | IPR006447 | GO:0003677(InterPro) | |
Clacu09g2308 | 382 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 29 | 89 | IPR017930 | - | |
Clacu09g2308 | 382 | Pfam | Myb-like DNA-binding domain | 34 | 84 | IPR001005 | - | |
Clacu09g2308 | 382 | Pfam | MYB-CC type transfactor, LHEQLE motif | 127 | 167 | IPR025756 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g0372 | Clacu-Chr5:3194446 | Clacu09g2308 | Clacu-Chr9:37762287 | 2.80E-38 | dispersed | |
Clacu07g0217 | Clacu-Chr7:2546176 | Clacu09g2308 | Clacu-Chr9:37762287 | 1.60E-30 | dispersed | |
Clacu09g2308 | Clacu-Chr9:37762287 | Clacu10g1325 | Clacu-Chr10:26219895 | 2.70E-34 | dispersed | |
Clacu02g1922 | Clacu-Chr2:32774216 | Clacu09g2308 | Clacu-Chr9:37762287 | 2.30E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48410 | PF00249 | Myb_DNA-binding | 2.10E-06 | CL0123 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu09g2308 | - | - | - | 0.0 |