Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0004 ATGCTTTCGGCTACTTCTCCACCGGATCTTGTGAAGATAGAGTGTTTGACTGTACCCGCCTCCCAATTTTCTAACTCAATCCTCTCCACCATCGATGTTGTACAACAGGTTATCGCCATTTTCTCTCCATTCACTAAATTACTCGGTGATTTACGCCTTTCCACCGCCGTTTCCGACTGTCTCGATTTGCTTGACTCTTCTGCTGACCAGTTGAGCTGGTCCCTCTCCGCCACCCAAAATCCCAAGGCTAAAGACCACAGCACCGGAGATTTGAGTTCCGATCTGAAGACATGGCTGAGCGCTGCAGTGGTTAATCCAGAAACATGCATGGATGGATTTGAGGGCACCAATAGCATTATCAAAGGTCTAGTATCTGGAAGCATCAACCAGTTAACTTCACAGCTCTACGAGCTTCTTTCCATGGTCAAATCAATCCCCAATCAGCCGGCGGCTGACTTTCCTTCCTGGGTGAAATCTGAGGACCGGAACCTGCTGCAACTAAATGACTTCGCCGCCGATGCCACTGTGGCCGCCGATGGGACTGGGGATTTCACCAGTGTGATGGATGCTGTATTAGCAGCCCCTGACAATAGCATACAACGTTATGTTATATACATAAAGAGGGGTGTGTACTTTGAGAACGTGGAGATCAAGAAGAAGAAATGGAATCTAATGATGATTGGAGATGGAATTGATGCCACCACCATATCGGGTAATCGGAGTTTTATTGACGGTTGGACAACATTCCGTTCAGCGACATTTGCTGTAAGTGGAAGAGGATTCATAGCTCGAGACATAACATTCGAGAATACTGCAGGGCCACAGAAACATCAAGCAGTAGCACTTAGATCGGACTCGGATCTGTCGGTATTTTTTAGATGCCGTATTAGAGGATATCAAGACACTCTGTACACGCACACCATGCGCCAATTCTACCGCGAGTGCCAAATCAGTGGCACCGTTGATTTTCTGTTCGGCGATGCCACCGTCGTTTTCCAAAATTGTAGCATCCTCGCGAAGAAAGGTCTTCCCAATCAGAAAAACACCATCACTGCTCAAGGCCGGAAAGACCCAAACCAACCCACCGGCTTCTCCATTCAATTCTGCAACATCTCTGCGGATTCAGATCTTAAACCTTCGGTTAACACCACAGCTACATACCTTGGAAGACCATGGAAAGAATATTCTAGAACCATTATCATGCAGTCATATATGAGCGACGCCATTAGGCCAGAAGGTTGGCTTGAGTGGAACGCCGATTTTGCATTGAAGACACTATTCTACGCTGAGTTTATGAATTATGGACCAGGGGCGGGATTGGCGAAGCGTGTCACTTGGCCTGGTTACCGCCGGCTGAACCAAACTAGTGAAGCTTCTAACTTTACCGTGGCTCAATTCATTGAAGGAAACCTGTGGTTGCCGTCCACCGGTGTCAAATACACTGCAGGATTGGGAGCTAATTAA 1464 47.4 MLSATSPPDLVKIECLTVPASQFSNSILSTIDVVQQVIAIFSPFTKLLGDLRLSTAVSDCLDLLDSSADQLSWSLSATQNPKAKDHSTGDLSSDLKTWLSAAVVNPETCMDGFEGTNSIIKGLVSGSINQLTSQLYELLSMVKSIPNQPAADFPSWVKSEDRNLLQLNDFAADATVAADGTGDFTSVMDAVLAAPDNSIQRYVIYIKRGVYFENVEIKKKKWNLMMIGDGIDATTISGNRSFIDGWTTFRSATFAVSGRGFIARDITFENTAGPQKHQAVALRSDSDLSVFFRCRIRGYQDTLYTHTMRQFYRECQISGTVDFLFGDATVVFQNCSILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFCNISADSDLKPSVNTTATYLGRPWKEYSRTIIMQSYMSDAIRPEGWLEWNADFALKTLFYAEFMNYGPGAGLAKRVTWPGYRRLNQTSEASNFTVAQFIEGNLWLPSTGVKYTAGLGAN 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 445953 448368 + ClG42_10g0000400.10 Clacu10g0004 258628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0004 487 Pfam Plant invertase/pectin methylesterase inhibitor 45 141 IPR006501 GO:0004857(InterPro)
Clacu10g0004 487 Pfam Pectinesterase 173 470 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu10g0004 487 FunFam Pectinesterase 167 484 - -
Clacu10g0004 487 SMART PMEI_2 6 145 IPR006501 GO:0004857(InterPro)
Clacu10g0004 487 PANTHER PECTINESTERASE 49 475 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu10g0004 487 Gene3D Invertase/pectin methylesterase inhibitor family protein 16 148 IPR035513 -
Clacu10g0004 487 Gene3D - 170 486 IPR012334 -
Clacu10g0004 487 SUPERFAMILY Pectin lyase-like 171 483 IPR011050 -
Clacu10g0004 487 CDD PMEI-like_4 1 146 - -
Clacu10g0004 487 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 143 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1753 Clacu-Chr3:31304124 Clacu10g0004 Clacu-Chr10:445953 1.10E-131 dispersed
Clacu09g0554 Clacu-Chr9:4716330 Clacu10g0004 Clacu-Chr10:445953 2.70E-104 dispersed
Clacu09g0555 Clacu-Chr9:4738639 Clacu10g0004 Clacu-Chr10:445953 6.00E-128 dispersed
Clacu10g0004 Clacu-Chr10:445953 Clacu11g0163 Clacu-Chr11:1305609 1.60E-100 dispersed
Clacu10g0004 Clacu-Chr10:445953 Clacu01g0044 Clacu-Chr1:402410 1.40E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0004 K01051 - csv:101207185 890.182