Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu10g0006 | ATGACCTTTGACATGGCTCAGAGTGCTAGGACAATGGGTTCTTCCTTTAACTCCAGCAGTGGCAATGATGATACTCTCCTTCAAAGCTTTGCTGCTTCTTCAAATGGGGACGATTATGACAGTGATGGCTCCAATTTTGCACCCCCTACTCCTACAACCATATCCACGGCAATTCCTGCAGAACTTGCTGGTGTCATACCTTTGATTGACAGATTCCAGGTCGAAGGATTCTTAAGGATGATGCACAAACAAATCCATTCTTCTGGAAAACGTGGATTCTTTTCCAAAAGATCTGTAGGTCCTCAAGTTCGGGAAAAATTCACATTTGAGGATATGTTGTGTTTCCAAAAGGATCCTATACCAACTTCATTACTTAAAATTAACTCTGACCTGGTGAGCCGGGCCATAAAACTATTCCAAATAATCTTGAAGTACATAGGTGTTGACTCTTCTGATAGAGTTATTGCAACAAGCTTAGACGAACGAATTGAGCTTGTTGGAAAACTATACAAGCACACATTGAAACGTTCAGAGCTACGAGATGAACTTTTTATCCAAATCTCTAAGCAAACTAGAAATTCTCCTGATAGGCAATATTTAATCAAAGCATGGGAGCTGATGTATTTATGTGCATCTGCTATGCCTCCTAGCAAGGATATTGGTGGATATCTGTCAGAGTATGTTCATAATGTTGCCCAAGGCATAAGTACTGATCCGGAGGTTCGAGTTCTTGCATTAAATACACTGAATGCTTTGAAGCGTTGCATGAAGGCTGGTCCCAGGCATATAATACCAGGTCGCGAGGAAGTCGAAGCTCTTTTAACGGGCCAAAAACTTACAACTATAGTATTTTTCTTGGATGAAACTTTTGAAGAAATCACATATGATATGACAACAACAGTGGCTGATTCTGTTGAGGAACTTTCAGGTGTTATAAAACTGTCAGCACACTCTAGCTTCAGTCTTTTTGAATGCCGTAAGCTCGTTAGTGGGGCTAAAGCACTTGATCTAGGGAATGAGGAGTATGTTGGGCTTGATGATAACAAATATATTGGAGATCTGTTAGCAGAATTCAAGGCAGCAAAAGATCGAAGCAAAGGAGAAATTCTGCACTTCAAGTTGACATTTAAAAAGAAGCTGTTTCGGGAGTCTGATGAAGCTGTAGCGGACCCAATGTTTATACAACTGTCATATGTTCAGCTGCAGCATGACTATTTGTTGGGAAATTATCCTGTTGGAAGGGATGATGCTGCACAGCTTTCAGCACTACAAATCCTTGTTGAAATTGGATTTATTACCAGTCCAGAATCTTGCACTGATTGGAATTCGCTTCTAGAAAGATTTGTACCCAGACAAATTGCCATAACAAGACCAAAGCGAGAGTGGGAGTTGGATATTCTCTCGCGTTTTCGTTCAATGGAGCATTTGACGAAGGATGACGCGAGACAACAATTTCTTCGAATATTGAGAACACTTCCTTATGGGAATTCAGTTTTCTTCGGCGTCCGCAAGATTGATGATCCCATTGGACTTCTACCTGGGCGAATAATTTTGGGCATCAACAAAAGAGGGGTTCATTTCTTCCGTCCAGTTCCAAAGGAGTATTTACATTCTGCTGAATTAAGAGATATAATGCAGTTCGGTAGCAGTAACACTGCGGTTTTTTTTAAGATGAGAGTTGCTGGCGTTCTACACATTTTCCAGTTTGAGACCAAGCAGGGAGAAGAAATTTGCATTGCTCTGCAGACACACATAAATGATGTCATGTTGCGTCGTTACTCTAAAGCTAGATCTGCTGCTGTTGGTTCCATGCATGGAGATTCTTCCGGCAACTTAAAGATTCAAAGTGTGGAAGCATATGAGAAACGAGTTCAAGATTTGAGTAAGGACATTGAAGAGTCTAAGAGAAATGCTGAACAGTTGCTGAAGGAATTGCATGAAAAGAATAAGCAAGAAGTGGTAATGCAAGAAGAATTGGAAACCCTAAAAGAATCATTGAGATTTGAAAAGCACAACTTAGCTGAGGCAACACGTAGTCTTGAGAGGCTGAGATTGCAGTATGATGAAAAAGACAAGGAACACCAGGACATGCTAATCGAAAAAAGGGGTATGGAAGCAAAAATAGCAAAATTGAGCACCACGGTGTTGGAAAATAACGGGAAAAAAGATACAGTTGGAATTGATGAACAGCTTCTACAAAAACTTCAAGATGAGTTGAGGCTTCGAAATGATGAGTTGCAAGCCACTGAAGAAATTAGAAAGAAACTGGTAAATGAAAAGATGTTCCTGGAACAAAGAATTTTTGGACTTGAGAAGAAGACTAGCGATGAGATGGAACATCTCCAGAGAAGCTTTGAACATGAACGCAAAGTCTTGAAGCTGAGAGTGGCAGAACTTGAAAAAAAACTTGAAGAAGTAACTCAAGAACTAGCTGCCATGGAGTCAACTCTCACAATCAGGAACTCTGATTTGGCGGCACTGCAAAATAATTTGAAGGAACTAGAGGAACTACGAGAGATGAAAGAGGACATTGACCGAAAAAATGAGCAAACAGCCAAGATTTTGAAGATGCAAGGGGCTCAGCTAGCTGAGATGGAAGCGCTTTATAAGGAAGAGCAAGTTCTAAGGAAACGCTATTTCAACATGATAGAGGATATGAAAGGAAAAATTAGAGTTTACTGTCGACTTCGACCTCTTAATGATAAAGAAATTATTGAAAGAGAAAAAAATGTGCTTACAAGTCTAGATGAGTTCACAGTCGAACATCTTTGGAAAGATGATAAGCTGAAGCAACATATGTACGATCGTGTATTTGATGGCACTGCCTCCCAGGAGGATGTTTTTGAAGATACGCGGTATCTTGTCCAGTCTGCTGTAGATGGTTATAATGTATGCATATTTGCTTATGGTCAAACTGGTTCTGGGAAGACATTTACAATATATGGATCTGAGGACCACCCTGGACTAACACCACGTGCCATTGGAGAACTTTTTAGGATTTTGAAGCGGGATAGTAACAAGTTCTCGTTCTCATTGAAGGCATACATGCTAGAATTATATCAAGATACATTGGTAGATCTTCTTTTGCCAAGGAATGCAAAACGATTGAGATTAGAGATAAAAAAGGATACAAAGGGAATGGTATCCATTGAAAACATCACAATAGCTTCTATTTCAACATTTGAAGAATTGAAAAATATTATTTATAGAGGATTGGAGCAACGACATACTTCAGAGACTCAGATGAACGAAGAAAGTTCAAGATCACATTTGATACTTTCAATTATTATTGAAAGTACCAACCTTCAGACACAATCTGTTTCTAAAGGAAAGCTTAGTTTTGTTGATCTTGCGGGATCAGAGAGAGTGAAGAAATCAGGCTCTTCTGGTAGCCAACTTAAGGAAGCTCAAAGCATAAATAAATCACTTTCAGCACTTGGGGATGTTATCAGTGCTTTGTTTTTAGGGGGCCAGCACATACCTTACAGAAATCATAAGCTAACAATGTTGATGAGTGATTCACTCGGTGGTAATGCCAAAACGCTTATGTTTGTCAATGTCTCTCCGGCTGAATCCAACTTGGACGAGACATACAATTCACTCATGTATGCATCAAGAGTTCGATCAATTGTTAATGATCCAAGCAAAAATGTAGCATCTAAGGAGGTTGCTCGACTGAAAAAAATGGTCGCTTATTGGAAAGAACAAGCAGGTAGGAGGGGAGAGGATGAGGAGTTGGAAGAAATCCAAGACGAGCGACATACTAAAGAAAAGGGAGACGTTAGATATTCGATGTAG | 3798 | 39.81 | MTFDMAQSARTMGSSFNSSSGNDDTLLQSFAASSNGDDYDSDGSNFAPPTPTTISTAIPAELAGVIPLIDRFQVEGFLRMMHKQIHSSGKRGFFSKRSVGPQVREKFTFEDMLCFQKDPIPTSLLKINSDLVSRAIKLFQIILKYIGVDSSDRVIATSLDERIELVGKLYKHTLKRSELRDELFIQISKQTRNSPDRQYLIKAWELMYLCASAMPPSKDIGGYLSEYVHNVAQGISTDPEVRVLALNTLNALKRCMKAGPRHIIPGREEVEALLTGQKLTTIVFFLDETFEEITYDMTTTVADSVEELSGVIKLSAHSSFSLFECRKLVSGAKALDLGNEEYVGLDDNKYIGDLLAEFKAAKDRSKGEILHFKLTFKKKLFRESDEAVADPMFIQLSYVQLQHDYLLGNYPVGRDDAAQLSALQILVEIGFITSPESCTDWNSLLERFVPRQIAITRPKREWELDILSRFRSMEHLTKDDARQQFLRILRTLPYGNSVFFGVRKIDDPIGLLPGRIILGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICIALQTHINDVMLRRYSKARSAAVGSMHGDSSGNLKIQSVEAYEKRVQDLSKDIEESKRNAEQLLKELHEKNKQEVVMQEELETLKESLRFEKHNLAEATRSLERLRLQYDEKDKEHQDMLIEKRGMEAKIAKLSTTVLENNGKKDTVGIDEQLLQKLQDELRLRNDELQATEEIRKKLVNEKMFLEQRIFGLEKKTSDEMEHLQRSFEHERKVLKLRVAELEKKLEEVTQELAAMESTLTIRNSDLAALQNNLKELEELREMKEDIDRKNEQTAKILKMQGAQLAEMEALYKEEQVLRKRYFNMIEDMKGKIRVYCRLRPLNDKEIIEREKNVLTSLDEFTVEHLWKDDKLKQHMYDRVFDGTASQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEDHPGLTPRAIGELFRILKRDSNKFSFSLKAYMLELYQDTLVDLLLPRNAKRLRLEIKKDTKGMVSIENITIASISTFEELKNIIYRGLEQRHTSETQMNEESSRSHLILSIIIESTNLQTQSVSKGKLSFVDLAGSERVKKSGSSGSQLKEAQSINKSLSALGDVISALFLGGQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLMYASRVRSIVNDPSKNVASKEVARLKKMVAYWKEQAGRRGEDEELEEIQDERHTKEKGDVRYSM | 1265 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 461949 | 480079 | + | ClG42_10g0000600.10 | Clacu10g0006 | 258630 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu10g0006 | 1265 | ProSiteProfiles | MyTH4 domain profile. | 115 | 274 | IPR000857 | GO:0005856(InterPro) | |
| Clacu10g0006 | 1265 | CDD | FERM_B-lobe | 394 | 492 | IPR019748 | - | |
| Clacu10g0006 | 1265 | Gene3D | Kinesin motor domain | 828 | 1211 | IPR036961 | - | |
| Clacu10g0006 | 1265 | Pfam | Kinesin motor domain | 895 | 1210 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Clacu10g0006 | 1265 | Pfam | MyTH4 domain | 168 | 272 | IPR000857 | GO:0005856(InterPro) | |
| Clacu10g0006 | 1265 | Gene3D | - | 497 | 604 | IPR011993 | - | |
| Clacu10g0006 | 1265 | Gene3D | - | 1213 | 1261 | - | - | |
| Clacu10g0006 | 1265 | Gene3D | - | 278 | 382 | - | - | |
| Clacu10g0006 | 1265 | FunFam | Kinesin-like calmodulin-binding protein (ZWICHEL) | 94 | 276 | - | - | |
| Clacu10g0006 | 1265 | Gene3D | - | 391 | 492 | IPR014352 | - | |
| Clacu10g0006 | 1265 | FunFam | Kinesin-like calmodulin binding protein | 382 | 493 | - | - | |
| Clacu10g0006 | 1265 | ProSiteProfiles | FERM domain profile. | 279 | 593 | IPR000299 | GO:0005856(InterPro) | |
| Clacu10g0006 | 1265 | SUPERFAMILY | Second domain of FERM | 377 | 494 | IPR035963 | - | |
| Clacu10g0006 | 1265 | ProSiteProfiles | Kinesin motor domain profile. | 889 | 1210 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Clacu10g0006 | 1265 | Pfam | FERM central domain | 384 | 500 | IPR019748 | - | |
| Clacu10g0006 | 1265 | Gene3D | MyTH4 domain | 94 | 276 | IPR038185 | - | |
| Clacu10g0006 | 1265 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 889 | 1238 | IPR027417 | - | |
| Clacu10g0006 | 1265 | Pfam | PTB domain (IRS-1 type) | 510 | 586 | IPR002404 | - | |
| Clacu10g0006 | 1265 | CDD | KISc_C_terminal | 887 | 1212 | - | - | |
| Clacu10g0006 | 1265 | Coils | Coil | 732 | 773 | - | - | |
| Clacu10g0006 | 1265 | Coils | Coil | 782 | 854 | - | - | |
| Clacu10g0006 | 1265 | SUPERFAMILY | PH domain-like | 499 | 587 | - | - | |
| Clacu10g0006 | 1265 | MobiDBLite | consensus disorder prediction | 1236 | 1265 | - | - | |
| Clacu10g0006 | 1265 | FunFam | Kinesin-like calmodulin-binding protein (ZWICHEL) | 497 | 606 | - | - | |
| Clacu10g0006 | 1265 | FunFam | Kinesin-like calmodulin-binding protein | 833 | 1212 | - | - | |
| Clacu10g0006 | 1265 | SUPERFAMILY | Prismane protein-like | 832 | 893 | IPR011254 | GO:0003824(InterPro)|GO:0016491(InterPro) | |
| Clacu10g0006 | 1265 | PANTHER | KINESIN-LIKE PROTEIN KLP-3 | 729 | 1250 | IPR027640 | GO:0003777(InterPro)|GO:0007018(InterPro) | |
| Clacu10g0006 | 1265 | SMART | kinesin_4 | 887 | 1218 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Clacu10g0006 | 1265 | Coils | Coil | 617 | 700 | - | - | |
| Clacu10g0006 | 1265 | ProSitePatterns | Kinesin motor domain signature. | 1110 | 1121 | IPR019821 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro) | |
| Clacu10g0006 | 1265 | SMART | MyTH4_1 | 115 | 274 | IPR000857 | GO:0005856(InterPro) | |
| Clacu10g0006 | 1265 | CDD | FERM_C_KCBP | 496 | 602 | - | - | |
| Clacu10g0006 | 1265 | PRINTS | Kinesin heavy chain signature | 961 | 982 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Clacu10g0006 | 1265 | PRINTS | Kinesin heavy chain signature | 1160 | 1181 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Clacu10g0006 | 1265 | PRINTS | Kinesin heavy chain signature | 1111 | 1129 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Clacu10g0006 | 1265 | PRINTS | Kinesin heavy chain signature | 1080 | 1097 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Clacu10g0006 | 1265 | SMART | B41_5 | 275 | 499 | IPR019749 | - | |
| Clacu10g0006 | 1265 | FunFam | Kinesin-like calmodulin-binding protein (ZWICHEL) | 278 | 381 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu10g0006 | Clacu-Chr10:461949 | Clacu10g1112 | Clacu-Chr10:23529945 | 1.70E-64 | dispersed | |
| Clacu10g0006 | Clacu-Chr10:461949 | Clacu05g1643 | Clacu-Chr5:24363613 | 3.20E-68 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu10g0006 | K27887 | - | csv:101206704 | 2277.67 |