Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0008 ATGCGGTATTATTTGCAAGCGTCCCTCCCAAGTTCCCAACCAAATAAAAGGCCATCGAATCGATTTTCCATAAACACTTGTGGAGGTCCAAGTTCTGATGGCGATCGCTCTCCTTCAAGGCCTGCGGCTCTTGCGCGAGAGAAAGTAGAAACAACGTCGAATTCAAATTTCAGAATCACGTTGCTGAACGGACAATCGGACGGGAGAAGAAGAGGAACGCTGACATATAGGCCATTTTTAGGGTTTCTTTCTGGGTTGCATGTTCGTCAAATTACCACCAAAGATCGAAGCAGCAATTCCTATTTCCAAACATCGTACTTGTTTTCCAGGATTCCCCCTTTGGAACTGGAGATGTGTGACGCGAAGGAGAAACACGAATCTGCACAAGATGTTTCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGTAAAAGGTGAGTTTCACGATTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGACTGCTTCACCTGAGACTCATGTACAGGAAGTTGTACTTCCTGAGGATAATTTAGATAAACCTACGATTCCTCAGCAATCAAATGAAAATTCTGCGCATTTACTTCCCTTGGATCATGACCAAGCGTTGGACAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGCCCTGATGAGTTGCCCCCAAGGGATCCAGATGCTGCCTTTTCTAACTCTCCCCTGGAAACTGTTCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGATATGCCTGAAACTAAAACTGGTTCTCTTGATGATGCGTCAACAGCAAGTCACGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGGATTCAAACATGAATCACTCATTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCCTTCATGAAGGAGCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTCTATGGGGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGAGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGACATGCACAACAGTTTCGTGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCCATTATCAAGGATAAGAATGCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAACACGTACAAAATCACCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAACGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTTCGTGAAGAGGTGCGTGTCCAATCTGATCCAGCAGGACGTTTGGTCATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCTGTTGTCACCTTACACGGACAGTTGTTTGTTCGCGTTCCATTTGAACAGTTGGAATGA 1881 44.55 MRYYLQASLPSSQPNKRPSNRFSINTCGGPSSDGDRSPSRPAALAREKVETTSNSNFRITLLNGQSDGRRRGTLTYRPFLGFLSGLHVRQITTKDRSSNSYFQTSYLFSRIPPLELEMCDAKEKHESAQDVSVALSEGNQVNVKGEFHDSLSVPAEATPNSCEKETASPETHVQEVVLPEDNLDKPTIPQQSNENSAHLLPLDHDQALDKPDAEPASDVKTGPDELPPRDPDAAFSNSPLETVQSSMDAKSEAFDMPETKTGSLDDASTASHDEPVTPHPVSSCVKAETENAIELKVNEDSVTTPHNGDSNMNHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNALSMQKREKQLKSIGLLKRKKPSYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 496067 503703 + ClG42_10g0000800.10 Clacu10g0008 258632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0008 626 MobiDBLite consensus disorder prediction 430 447 - -
Clacu10g0008 626 MobiDBLite consensus disorder prediction 1 33 - -
Clacu10g0008 626 FunFam AT-rich interactive domain-containing protein 3 332 431 - -
Clacu10g0008 626 SMART bright_3 333 424 IPR001606 GO:0003677(InterPro)
Clacu10g0008 626 Gene3D - 522 626 IPR008978 -
Clacu10g0008 626 SUPERFAMILY HSP20-like chaperones 537 622 IPR008978 -
Clacu10g0008 626 CDD ARID 337 419 - -
Clacu10g0008 626 MobiDBLite consensus disorder prediction 207 227 - -
Clacu10g0008 626 FunFam AT-rich interactive domain-containing protein 3 518 626 - -
Clacu10g0008 626 SMART ARID_2 329 419 - -
Clacu10g0008 626 MobiDBLite consensus disorder prediction 430 453 - -
Clacu10g0008 626 Pfam Hsp20/alpha crystallin family 543 623 IPR002068 -
Clacu10g0008 626 ProSiteProfiles ARID domain profile. 332 423 IPR001606 GO:0003677(InterPro)
Clacu10g0008 626 MobiDBLite consensus disorder prediction 150 171 - -
Clacu10g0008 626 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 526 626 IPR002068 -
Clacu10g0008 626 SUPERFAMILY ARID-like 326 433 IPR036431 GO:0003677(InterPro)
Clacu10g0008 626 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 172 624 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Clacu10g0008 626 MobiDBLite consensus disorder prediction 207 283 - -
Clacu10g0008 626 Pfam ARID/BRIGHT DNA binding domain 335 419 IPR001606 GO:0003677(InterPro)
Clacu10g0008 626 Gene3D - 332 430 IPR036431 GO:0003677(InterPro)
Clacu10g0008 626 CDD ACD_sHsps_p23-like 545 621 - -
Clacu10g0008 626 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0008 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu06g0808 . 65 416 ARID Transcription Factor Family AT1G04880 58.4 9.6e-108 387.5
Clacu10g0008 . 324 594 ARID Transcription Factor Family AT1G20910 61.4 1.4e-91 333.6
Clacu05g1687 . 16 309 ARID Transcription Factor Family AT1G76110 67.8 5.4e-111 397.9
Clacu10g0008 . 303 624 ARID Transcription Factor Family AT1G76510 60.2 1.7e-109 393.3
Clacu07g1439 . 1 781 ARID Transcription Factor Family AT3G43240 58.9 3.4e-267 917.9
Clacu09g0138 . 92 853 ARID Transcription Factor Family AT3G43240 58.0 4.2e-257 884.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48415 PF00011 HSP20 1.10E-05 CL0190 Clacu TR