Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0009 ATGTCGTCGAACCATTCGGATTTTGAATCTTCAGCTTTTGATACTCAAACTTCGTCCAATCCGATTGCTCCCTTGGATCATCTTCCCTCCACCTCCTCCACCCTCTCTGAATCTGAAGAAAATCCCTGCACATCATCTTCGCCTTCCTCCACTCCACCTCCGATTCACCTACCTCTCTCTTGGCCTACCGATGCCACCCTTTCCCTCCAATGGATACACCATCTCATCGCCGCCTTCGACTGGTCTTCCAAAAATTTACCTCCATCCCAGTTTCCTTCCGTCCTTCCCGTCTCCGTTTTCGACACTCTAATCCTCACCGCTTCTAAAATCCTCCACAAAGAACCCAATTGCCTCAGAATCCTCCAAGACTCAGCCGCCAGCAGCGACTCGACTGTAGTCGTCGTCGGAGACATCCACGGCCAATTTCATGATCTCCTCTTTCTTCTGCAGGATGCTGGTTTTCCTTCTGAAAACCGCTTCTTTGTCTTCAATGGGGATTACGTCGACAGAGGGGCTTGGGGTCTTGAAACTTTTTTGCTCTTATTGGCTTGGAAGGTGTTTATGCCACATCGAGTATTTCTTCTTCGTGGAAACCACGAGTCCAAGTACTGCACATCCGTTTATGGTTTTGAGAAGGAGGTGCTAACCAAGTACGGAGACAAGGGTAAGCATGTCTATCGGAAGTGCTTGGGGTGTTTCGAAGGGCTGCCTTTGGCCTCCATTATTGCTGGATGTGTATATACGGCTCATGGAGGACTTTTCCGCAGCATATCAGTTCCTTCGTCTAAAAGGTCGAAAGGGAAAAAAAATCGTAGGATAATCTTAAATCCCGAAGCCAACGGGTTATCTCTTGGTTCTTTGGAGGAACTATCCAAAGCCAGAAGATCGGTTCTTGATCCCCCATGGGAAGGCTTGAATTTAATTCCGGGCGATGTGTTGTGGTCTGATCCCTCGATGAATCCTGGTCTCTCCCCAAATAAAGAGAGAGGCATAGGTCTCTTGTGGGGTCCTGATTGCACTGAAGAATTCTTGAAAAAATTCAATCTGAAGCTAATTATTAGATCCCATGAAGGTCCTGATGCTAGAGAAAAGAGACCCGGTCTTGCAGGAATGGATCAGGGTTACACGATAGATCATGTTGTAGATTCAGGGAAACTGATTACTTTGTTTAGTGCTCCAGACTATCCACAATTTCAGGCAACTGAGGAGAGATACAAAAACAAAGGTGCATATATTGTTCTAGAACCTCCGAATTTTGATGTTCCAATCATTCATAGTTTTGATGCCATTACTCCACGACCAAAGGTCAATGCATATTACGATTTTGAGGATGTAATTGATTCTGACGAAGAATTAGACTTGGCTTCAATGGCAACTGATCCATGA 1386 45.74 MSSNHSDFESSAFDTQTSSNPIAPLDHLPSTSSTLSESEENPCTSSSPSSTPPPIHLPLSWPTDATLSLQWIHHLIAAFDWSSKNLPPSQFPSVLPVSVFDTLILTASKILHKEPNCLRILQDSAASSDSTVVVVGDIHGQFHDLLFLLQDAGFPSENRFFVFNGDYVDRGAWGLETFLLLLAWKVFMPHRVFLLRGNHESKYCTSVYGFEKEVLTKYGDKGKHVYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSISVPSSKRSKGKKNRRIILNPEANGLSLGSLEELSKARRSVLDPPWEGLNLIPGDVLWSDPSMNPGLSPNKERGIGLLWGPDCTEEFLKKFNLKLIIRSHEGPDAREKRPGLAGMDQGYTIDHVVDSGKLITLFSAPDYPQFQATEERYKNKGAYIVLEPPNFDVPIIHSFDAITPRPKVNAYYDFEDVIDSDEELDLASMATDP 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 504384 515923 - ClG42_10g0000900.10 Clacu10g0009 258633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0009 461 CDD MPP_PP7 61 441 IPR041754 -
Clacu10g0009 461 ProSitePatterns Serine/threonine specific protein phosphatases signature. 195 200 IPR006186 GO:0016787(InterPro)
Clacu10g0009 461 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 34 453 IPR051134 -
Clacu10g0009 461 FunFam Serine/threonine-protein phosphatase 79 455 - -
Clacu10g0009 461 SUPERFAMILY Metallo-dependent phosphatases 92 433 IPR029052 -
Clacu10g0009 461 MobiDBLite consensus disorder prediction 1 57 - -
Clacu10g0009 461 MobiDBLite consensus disorder prediction 1 46 - -
Clacu10g0009 461 Pfam Calcineurin-like phosphoesterase 131 357 IPR004843 GO:0016787(InterPro)
Clacu10g0009 461 Gene3D - 89 449 IPR029052 -
Clacu10g0009 461 SMART pp2a_7 95 431 IPR006186 GO:0016787(InterPro)
Clacu10g0009 461 PRINTS Serine/threonine phosphatase family signature 194 218 IPR006186 GO:0016787(InterPro)
Clacu10g0009 461 PRINTS Serine/threonine phosphatase family signature 131 158 IPR006186 GO:0016787(InterPro)
Clacu10g0009 461 PRINTS Serine/threonine phosphatase family signature 231 257 IPR006186 GO:0016787(InterPro)
Clacu10g0009 461 PRINTS Serine/threonine phosphatase family signature 385 401 IPR006186 GO:0016787(InterPro)
Clacu10g0009 461 PRINTS Serine/threonine phosphatase family signature 161 188 IPR006186 GO:0016787(InterPro)
Clacu10g0009 461 PRINTS Serine/threonine phosphatase family signature 291 318 IPR006186 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g2029 Clacu-Chr9:35074806 Clacu10g0009 Clacu-Chr10:504384 2.10E-113 dispersed
Clacu10g0009 Clacu-Chr10:504384 Clacu11g1468 Clacu-Chr11:25865622 2.80E-30 dispersed
Clacu10g0009 Clacu-Chr10:504384 Clacu09g2245 Clacu-Chr9:37252405 1.80E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0009 K04460 - csv:116402510 820.076