Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0012 ATGACTCGCTATATCAGAGCTCTCGCCGCGAATACTTCGTCGGCACCGCCGCCGGAGGCGGTGGCTTTGGAGTCGGACTTCGTGGTGATTCTGGCAGCGCTGCTGTGTGCCCTAATTTGTATGGTAGGGCTGATAGCGGTGGCTCGGTGCGCGTGGCTCCGCCGTGGGGGTGGAAGTGTTGGAAATCAGGCGTCGGCGAATAGAGGACTGAAGAAGAAGATCCTGCAGTCGCTTCCGAAATTCAGGTACAAGTCGACCGGGGGAGAGGGGAAAATTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCATGGAGGGGGAGGAGATCCGGCAGCTGCCACAGTGCGGACATTGCTTCCACGTCAGCTGTGTAGACACGTGGCTGGGGTCCCACTCCTCATGTCCTTCTTGCCGTCAGATTCTGGTAGTGGCGAGATGCCAGAAGTGCGGGCAGTTTCCGGCCGTCGTGCAAGGCGGCGCTGCTCACAACAACGAAGAAGAGGAGGAAGTGGAAGATAACAACAGGGGTTTGGGATTTTTGCCTTGA 546 58.42 MTRYIRALAANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGGGSVGNQASANRGLKKKILQSLPKFRYKSTGGEGKIAAECAICLAEFMEGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARCQKCGQFPAVVQGGAAHNNEEEEEVEDNNRGLGFLP 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 537915 538460 - ClG42_10g0001200.10 Clacu10g0012 258636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0012 181 SUPERFAMILY RING/U-box 76 144 - -
Clacu10g0012 181 CDD RING-H2_EL5-like 95 138 - -
Clacu10g0012 181 FunFam E3 ubiquitin-protein ligase ATL6 59 144 - -
Clacu10g0012 181 MobiDBLite consensus disorder prediction 160 181 - -
Clacu10g0012 181 SMART FANCL_C_2 92 146 - -
Clacu10g0012 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 142 IPR013083 -
Clacu10g0012 181 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 15 168 IPR052788 -
Clacu10g0012 181 SMART ring_2 96 137 IPR001841 -
Clacu10g0012 181 Pfam Ring finger domain 95 138 IPR001841 -
Clacu10g0012 181 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0012 Clacu-Chr10:537915 Clacu11g2071 Clacu-Chr11:31605524 1.30E-42 dispersed
Clacu10g0012 Clacu-Chr10:537915 Clacu02g0070 Clacu-Chr2:710233 4.70E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0012 - - - 0.0