Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0028 ATGCCAGAGGAAACTCAGACACATCAGCTCTCCTCCACCGCGATTATGATGGAGTGGGAAAAGCCTGAGCAGCAAAATCCTTACCACCATCAGAACCCTCCTCTTCGAGACGATCATCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCGACACCTGTGCAACTTCAGATCTTAGAGCGTATTTTTGAGCAAGGGAATGGAACTCCCAGCAAACAAAAGATCAAAGAGATAACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGTACAGTCCCCGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAGTCACCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAATCCTCTGCACCTTTGGGGGATGACATGTGCTTCCAAAGTCCCGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACGGCGAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGGGAATGAGCAGCTGGCAGGAAAGATTGAAACGCCAGAGACCTATAGTCTTTACCAGCAAGCAGAAGGCTACAGCATGACCGAACGACCATGA 885 47.46 MPEETQTHQLSSTAIMMEWEKPEQQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTVPAYGESEVETEVESPKDKKTKPVDFQTHQSSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFPSNGSLKTARSFSQMSFYEAGNEQLAGKIETPETYSLYQQAEGYSMTERP 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 704527 708493 + ClG42_10g0002800.10 Clacu10g0028 258652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0028 294 CDD homeodomain 115 177 IPR001356 GO:0003677(InterPro)
Clacu10g0028 294 Pfam Homeodomain 115 175 IPR001356 GO:0003677(InterPro)
Clacu10g0028 294 SUPERFAMILY Homeodomain-like 111 179 IPR009057 -
Clacu10g0028 294 PANTHER WUSCHEL-RELATED HOMEOBOX 13 42 291 IPR044559 GO:0003700(InterPro)
Clacu10g0028 294 MobiDBLite consensus disorder prediction 174 216 - -
Clacu10g0028 294 ProSiteProfiles 'Homeobox' domain profile. 111 176 IPR001356 GO:0003677(InterPro)
Clacu10g0028 294 MobiDBLite consensus disorder prediction 190 205 - -
Clacu10g0028 294 SMART HOX_1 113 180 IPR001356 GO:0003677(InterPro)
Clacu10g0028 294 Gene3D - 117 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0028 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0028 Clacu-Chr10:704527 Clacu11g2061 Clacu-Chr11:31539946 7.70E-74 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu04g1119 . 1 195 Wox Gene Family AT3G18010 57.2 3.0e-48 189.5
Clacu06g1538 . 1 176 Wox Gene Family AT3G18010 53.6 6.0e-41 165.2
Clacu10g0028 . 16 291 Wox Gene Family AT4G35550 51.5 3.9e-72 268.5
Clacu11g2061 . 1 271 Wox Gene Family AT4G35550 50.9 2.1e-57 219.5
Clacu08g1770 . 5 162 Wox Gene Family AT1G46480 65.1 2.4e-52 202.2
Clacu04g1119 . 1 195 Wox Gene Family AT3G18010 57.2 3.0e-48 189.5
Clacu06g1538 . 1 176 Wox Gene Family AT3G18010 53.6 6.0e-41 165.2
Clacu08g1770 . 5 162 Wox Gene Family AT1G46480 65.1 2.4e-52 202.2
Clacu10g0028 . 16 291 Wox Gene Family AT4G35550 51.5 3.9e-72 268.5
Clacu11g2061 . 1 271 Wox Gene Family AT4G35550 50.9 2.1e-57 219.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48418 PF00046 Homeodomain 9.70E-19 CL0123 Clacu TF