Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0039 ATGCCGATTGAAGATGATGTTGAGAGCTGCGGTAGCAGAGCCACCGACTCCTCCTCGTCCCATGTGAACCCGAGGCATCATCGCCAGAAGCTTGAAGTCTACAACGAAGTGCTCCGACGAATCCAGCAATCCAATTTCCATGAGGCCAATCTACCTGGGTTTGATGATCAGCTTTGGCTTCATTTTAATCGCCTCCCTGCTCGATACGCATTGGATGTGAATGTCGACAGGGCAGAAGATGTCCTCACGCATAAGAGATTACTTCAATTGGCTCTGGACCCTGCTAACCGACCTGTATTTGAAATCCGTTCTGTGCAGGTTTATCCTTCTGCTAATGAAAACTTTATCAATTCTTCTTGTTTGGATTCTTCAATGATGGAAGATGCTCAGAGTTCTTTGAACTATTCTAACAGACAGGGGAACCATCCACCTCCAACCTTTGGCTCTTCACCTAATCTTGAAGCCCTTCCATTTCAGGGCTGGAAGTACGGTGTTGAAGATAGGGACAGTGCCCCAAATGTGACACCCTGTTTCTCTCGGCCAATGCATGAGATCACATTTGCAACAAGTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCCTTACTAGCTGATGTTGGACTTAACATACAAGAAGCCCATGCTTTCTCCTCTGTTGATGGTTTCTCTCTGGATGTTTTTGTCATCGATGGTTGGCCTTATGAGGAAACTGAGGAGCTGAAAAGGGTATTAGAAAAAGAAATTTTAAATTTTAAGGAGCAGTGTTGGTCAGAAAAGCAGCCCAGTCCTGCTTTGGGTAAGGATAACCAGAATAGAGTTGAATCTTTCCCTAGTTGTGTTGAAATACCTACTGATGGTACTGATGTCTGGGAAATTGACACCAGACAACTAAAATTTGAGAATAAAGTTGGATCCGGGTCATTTGGGGACCTGTATCGGGGCACATATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAGGCCTGAGCGTATTAATGAAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGAAAAGTTCGGCACAAAAATGTTGTTCAATTCATTGGTGCTTGTACTAAACCTCCAAACCTCTGCATTGTGACAGAGTTTATGTCGAGAGGAAGTGTATATGACTTCCTTCATAAGCAAAGAGGTGTATTTAACCTTCCATCTCTACTTAAAGTAGCCATTAATATTTCAAGAGGGATGAACTATTTGCATCAAAATAATATAATCCATCGAGACCTCAAGACTGCCAATCTTCTGATGGATGAAAACATGGTTGTCAAGGTTGCTGATTTTGGAGTTGCCAGAGTTCAAACTCAATCTGGAGTGATGACTGCTGAAACTGGAACATACCGGTGGATGGCTCCTGAAGTTATTGAGCATAAACCATATGACCATAAGGCAGACGTTTTCAGCTTTGGAATAGCCTTATGGGAGCTTTTAACTGGAGAAATTCCTTACTCATCCATGACCCCACTACAAGCAGCGGTTGGCGTGGTCCAGAAGAGACAGCGGCCTACGATACCAAAGAATGTCCATCCCGTTCTTGCTGAACTGCTTGAAAGATGCTGGAGGCATGATCCAACCAAACGGCCAAACTTCTCTGAAATTTTGGAGATCCTCAAGCAGATAGCTGAGCAGGTTGAAAACAACGGGGAAAATCAACGCAAGAAGGATAAATTATCTGGTGCGTTCTTCTCAGCCTTCAAGAGGGGACACCACTGA 1740 43.45 MPIEDDVESCGSRATDSSSSHVNPRHHRQKLEVYNEVLRRIQQSNFHEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLTHKRLLQLALDPANRPVFEIRSVQVYPSANENFINSSCLDSSMMEDAQSSLNYSNRQGNHPPPTFGSSPNLEALPFQGWKYGVEDRDSAPNVTPCFSRPMHEITFATSDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPYEETEELKRVLEKEILNFKEQCWSEKQPSPALGKDNQNRVESFPSCVEIPTDGTDVWEIDTRQLKFENKVGSGSFGDLYRGTYCSQEVAIKVLRPERINEEMLKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSVYDFLHKQRGVFNLPSLLKVAINISRGMNYLHQNNIIHRDLKTANLLMDENMVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIALWELLTGEIPYSSMTPLQAAVGVVQKRQRPTIPKNVHPVLAELLERCWRHDPTKRPNFSEILEILKQIAEQVENNGENQRKKDKLSGAFFSAFKRGHH 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 798985 806043 - ClG42_10g0003900.10 Clacu10g0039 258663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0039 579 Coils Coil 543 563 - -
Clacu10g0039 579 CDD ACT_TyrKc 182 249 - -
Clacu10g0039 579 ProSitePatterns Protein kinases ATP-binding region signature. 303 324 IPR017441 GO:0005524(InterPro)
Clacu10g0039 579 Gene3D Transferase(Phosphotransferase) domain 1 376 573 - -
Clacu10g0039 579 ProSiteProfiles ACT domain profile. 184 262 IPR002912 -
Clacu10g0039 579 SMART serkin_6 297 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0039 579 Pfam Protein tyrosine and serine/threonine kinase 297 546 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0039 579 SUPERFAMILY Protein kinase-like (PK-like) 275 546 IPR011009 -
Clacu10g0039 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0039 579 Coils Coil 234 254 - -
Clacu10g0039 579 PANTHER SERINE-THREONINE PROTEIN KINASE 142 550 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu10g0039 579 PRINTS Tyrosine kinase catalytic domain signature 454 464 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0039 579 PRINTS Tyrosine kinase catalytic domain signature 371 384 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0039 579 PRINTS Tyrosine kinase catalytic domain signature 408 426 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0039 579 PRINTS Tyrosine kinase catalytic domain signature 473 495 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0039 579 PRINTS Tyrosine kinase catalytic domain signature 517 539 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0039 579 CDD STKc_MAP3K-like 303 546 - -
Clacu10g0039 579 SUPERFAMILY ACT-like 182 247 IPR045865 -
Clacu10g0039 579 FunFam Serine/threonine-protein kinase isoform 1 287 375 - -
Clacu10g0039 579 Gene3D Phosphorylase Kinase; domain 1 287 375 - -
Clacu10g0039 579 ProSiteProfiles Protein kinase domain profile. 297 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0039 579 FunFam serine/threonine-protein kinase HT1 376 567 - -
Clacu10g0039 579 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0408 Clacu-Chr2:3661774 Clacu10g0039 Clacu-Chr10:798985 2.90E-226 dispersed
Clacu02g1986 Clacu-Chr2:33329903 Clacu10g0039 Clacu-Chr10:798985 3.80E-40 dispersed
Clacu04g1031 Clacu-Chr4:24581566 Clacu10g0039 Clacu-Chr10:798985 8.30E-59 dispersed
Clacu05g1691 Clacu-Chr5:25574193 Clacu10g0039 Clacu-Chr10:798985 4.70E-179 dispersed
Clacu05g1719 Clacu-Chr5:26043998 Clacu10g0039 Clacu-Chr10:798985 1.10E-45 dispersed
Clacu08g0837 Clacu-Chr8:18389868 Clacu10g0039 Clacu-Chr10:798985 9.80E-137 dispersed
Clacu10g0039 Clacu-Chr10:798985 Clacu11g1310 Clacu-Chr11:22301673 2.70E-70 dispersed
Clacu10g0039 Clacu-Chr10:798985 Clacu01g2229 Clacu-Chr1:33489435 1.70E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73857 PF07714 PK_Tyr_Ser-Thr 2.40E-75 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0039 - - - 0.0