Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0044 ATGGATTTCATAGCCAACCCATTTCGCTTTTCTTCATCTTCATCGCCTTCCTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGCTGCTATGCGGTTTCTGCGATTCTTGGCAACATCTTGTCTGCGATCTTCACTTTCTTCTTCGCTCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGATGAATCAGGGATAGGCTGTCTCCTTTATCTGATTGATGTCATTGCTAGCCTCCTCAGTGGACGTCTAGTTCGAGAACGCATCGGTCCGGCGATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTTCAGAGACAAGCTTTGATGACATTCCGAACATCTTTGACACCAGCAGTTCGAAAGGATTGCCTGGGGACTCGGTCGAGAAAATTCCCAAGATCGTAGTATCTAAGAACAATAGTGTAGATGCTTATGGTGAGAGAGTCTGTTGTTCTGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGTTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGCTCTTGCCCTCTATGCAGAAGGGATCTGTAA 708 44.92 MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGASETSFDDIPNIFDTSSSKGLPGDSVEKIPKIVVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 847065 848415 + ClG42_10g0004400.10 Clacu10g0044 258668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0044 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Clacu10g0044 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
Clacu10g0044 235 SUPERFAMILY RING/U-box 176 235 - -
Clacu10g0044 235 Pfam YMGG-like Gly-zipper 50 85 IPR027367 -
Clacu10g0044 235 CDD RING-H2_NIPL1-like 189 232 - -
Clacu10g0044 235 SMART ring_2 190 231 IPR001841 -
Clacu10g0044 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Clacu10g0044 235 Pfam Ring finger domain 190 232 IPR001841 -
Clacu10g0044 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 235 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0044 Clacu-Chr10:847065 Clacu11g1624 Clacu-Chr11:27386321 1.40E-12 dispersed
Clacu10g0044 Clacu-Chr10:847065 Clacu05g0339 Clacu-Chr5:2929841 1.00E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0044 - - - 0.0