Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0045 ATGCTATCAAGCTTGATGAACTTCCTGAGGGCTTGCTGGCAGCCATGTGCCGATCATCTCTTGCGTCGTCGGGGCGGTGGTTCCGATTCGGTTGGCTGCCAAGATGGGCTACTTTGGTACAAGGACCATGGCCATCACATCAATGGAGAATTTTCAATGGCTGTTGTTCAAGCCAACAATTTACTTGAGGATCAGAGTCAGCTTGAGTCTGGTCCCTTGAGCTTGCTCGAGTCTGGACCCTATGGAACCTTTATAGGAATATACGATGGCCATGGCGGCCCTGAGACATCACGATTCATATGTGATAACTTGTTCCAGCATCTCAAAGTGTTCGCCACAGAAGAAAAGGAAATGTCAGTTAATGTGATAAAAAAAGCATTCCAAGCAACAGAAGAGGGGTTTCTCTCTATTGTCACCAAGCAATGGCCTATGAACCCCCAGATTGCGGCTGTTGGTTCTTGCTGTCTGGTTGCTGTGATTTGTAATGGAAAACTCTACATTGCCAATCTTGGTGATTCCCGAGCTGTGTTGGGAAGGTTAGTTCGGTCCACGGGGGAAGTTCTTCCCATTCAGCTGTCATCGGAGCATAATGTAAGCATACAGTCAGTCCGCCAGGAGATGCAGTCTTTGCACCCAGATGACTCCCACATAGTAGTGCTGAAGCATAATGTATGGCGCGTAAAGGGCTTGATTCAGATTTCTCGGTCAATCGGAGACGTATATCTCAAAAAGCCAGAATTTAACCGGGAGCCTTTGTATGCTAAGTTTCGCCTCCGAGAACCCTTCAGTAGGCCTATTTTGAGCTCAGAACCAGCAGTCTCTGTGCACGAACTAGATACAAATGATCAATTTCTCATATTTGCCTCTGATGGGCTGTGGGAGCACCTTAGCAACCAGGATGCGGTTGATATAGTTCACAAGCATCCTCACAGTGGAAGTGCAAGGAGGCTGGTGAAAGCTGCAATGCAGGAAGCAGCTAAGAAACGAGAAATGCGATACTCGGATTTGAAGAAGATTGACCGTGGAGTTCGGCGCCATTTTCACGACGACACAACGGTGATAGTCGTGTTTCTTGGATCGAGCAGAGGGAGCAGCCCTGGTACAGCAGGGGAAGGGAGCCCTGTTTTGTCTGTGAGAGGGGGAGGAATGAACCTATCTGCAAAATCTCTAGCACCTTGA 1179 48.26 MLSSLMNFLRACWQPCADHLLRRRGGGSDSVGCQDGLLWYKDHGHHINGEFSMAVVQANNLLEDQSQLESGPLSLLESGPYGTFIGIYDGHGGPETSRFICDNLFQHLKVFATEEKEMSVNVIKKAFQATEEGFLSIVTKQWPMNPQIAAVGSCCLVAVICNGKLYIANLGDSRAVLGRLVRSTGEVLPIQLSSEHNVSIQSVRQEMQSLHPDDSHIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYAKFRLREPFSRPILSSEPAVSVHELDTNDQFLIFASDGLWEHLSNQDAVDIVHKHPHSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFLGSSRGSSPGTAGEGSPVLSVRGGGMNLSAKSLAP 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 851231 853851 - ClG42_10g0004500.10 Clacu10g0045 258669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0045 392 PANTHER PROTEIN PHOSPHATASE 43 357 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu10g0045 392 ProSiteProfiles PPM-type phosphatase domain profile. 50 358 IPR001932 -
Clacu10g0045 392 SUPERFAMILY PP2C-like 62 359 IPR036457 -
Clacu10g0045 392 Pfam Protein phosphatase 2C 83 327 IPR001932 -
Clacu10g0045 392 Gene3D - 40 363 IPR036457 -
Clacu10g0045 392 CDD PP2Cc 82 358 IPR001932 -
Clacu10g0045 392 MobiDBLite consensus disorder prediction 362 381 - -
Clacu10g0045 392 ProSitePatterns PPM-type phosphatase domain signature. 84 92 IPR000222 GO:0043169(InterPro)
Clacu10g0045 392 SMART PP2C_4 42 356 IPR001932 -
Clacu10g0045 392 FunFam Phosphatase 2C family protein 39 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0419 Clacu-Chr2:3772477 Clacu10g0045 Clacu-Chr10:851231 1.10E-160 dispersed
Clacu02g1241 Clacu-Chr2:24995670 Clacu10g0045 Clacu-Chr10:851231 4.10E-153 dispersed
Clacu02g1409 Clacu-Chr2:27350236 Clacu10g0045 Clacu-Chr10:851231 2.60E-138 dispersed
Clacu06g0432 Clacu-Chr6:5126609 Clacu10g0045 Clacu-Chr10:851231 2.10E-116 dispersed
Clacu10g0045 Clacu-Chr10:851231 Clacu10g2041 Clacu-Chr10:33869066 5.90E-138 dispersed
Clacu01g2125 Clacu-Chr1:32897366 Clacu10g0045 Clacu-Chr10:851231 1.00E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0045 K01102 - csv:101220137 738.799