Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0060 ATGGCAGAAGAGGATACCCCATCTGAAAGTTCTGAACCTTCTTCTTCTTCTTCAGCTCTCACCTCTTCAATGTCCACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGCCTTGCAACTTCTTTGAGAAGAAACACAGCCCCTCGTAGCAGAAGAATCTTTCATAGAGATGTTGAACAACAAGAGTTTCAATATGGAAGCTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGTCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACGATACTCACATGGCATTTCACGAAGAGCTACACAGCACAGTCTCTAGACAGCTTAGCGTATGGTCTTCGTCATGAACTGCTGCAGCGCCCGATTTTACGGATGTGGAGTGTCTTGAATTCCACAGCTGAAATAACCACAGCTCAGGTCAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCCGTGAATCAAGCAGAGCAAGTTGAGTTGTATGAAGCAATGAGGGACGTTACTTGGGCAATGTTTGCAAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGGTTTGTCCAGGCATTTCATCGAGATCATAGAAGCAACAATACATTTTATATTTACTCAGATCTTGCAAACTATTCCATCAGTGCCACTCAATCATATAATATCAATCGGCTTTCTTCGGGTGAAGGGTGGTCGGAGCCACCCATACATGGCAATGTTTCTGCAAAATGGTTCCGGGAACCGCTTGATCCTATTAGCGGTGAGAAGATCGGGAAAGCAAGGCAAATCCCACCTGAGGACTTGATTAATATTGCTGGCATTTCACAGGTAGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCATTGCTTTCAGCAGCTCTACCTGTTTCTGATGCTTCAAATGAAAGCATCGTTGCAGTGGTGGGTGTTACGACCGCCCTTTATAGCGTAGGTCAACTTATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCGGCTAATGCTCCCCTGTTAAGAAATACATCAAGCGGTCCAAAGCTTATGATGGCTGCCGATTCCCAGGATGATGTGATTCGATTAGGAGCTGAGTGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGTCATGAGGTCCATGAGGAGAATGTCAAGCTTGGTGATAAGCAATATTACATCGACTCATTTTTCCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTACAAAACATTGGTTATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGAGCGGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGGACACCAATGGCTGCAGTAATTGGACTGCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTTCGACAGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTCCGACTTCTTAACAACATACTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTGGGACGAGAACTCGAAGGGCTTGTTGATATGTTCTCTGTGCAGTGCATTAACCATAATGTGGAAACTGTATTGGATCTCTCTGACAACATGCCAAAATTAGTTCGAGGAGACTCTGGTCGAGTTGTTCAAATATTCACAAACTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGTGAGACGTCAAATACTCTTAAAGAAACGGGAAAGTTCTGTATGGATCAGAAGAAATCACGGTTTCCTAATCGAACAAAGATGAAACAACAGGGAGACCACACAAAGAATGCCTTCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGCTGTGGGATTGATCCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCAACAACCCGAACGCATGGTGGCACGGGTCTTGGACTATGCATTGTACGTACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAAAACGGCCCGGGAACTCTAATGCGACTTTATTTGGTTCTCAGCACACCTGCAGACTCCACAGATCATCACTGTCAGTTTGATTTTGCAAAACATAATGCGGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACGTCACAGTGGCTTCGTAAAATCGGACTGTTCACTTTAGAGGCTTCAGAGTGGAATGAACTAACACTAATCCTTCAGGAACTCTTTCAAGCCAAAAGTTCTGAAAATAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAAACATTACGAGCTGAGTTAATGAGAATTAAAGATATGAAAAGCCAAATATTCATCATTGTTGCCGATATCGGGATACTGGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGCAAAATTTGCTTGGATGTTAAACCATGATACATCCAACGCCATAAAGATGGAGCTCCGGGGAAAAGGGCACATTATAATGAACAATAAGCCACTGTACAGATCAAAGATGATTCATATTTTGGAAGCTGTTATGAAGGACAGAAATCTTGAGTTGCAAAGGAAAAATGCTTTAAGAACTGCATCAAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCTGATGATTCTGATGTATCTGAACTTGGAAATCCTGACTCTCAGTGTGCGACATTTGAAGTCAGAGACAGCCAAGAAGAAACGACACCGAAACCACGTCAGTCACCATTTCTGCCCATTAACAATAGTTTAGTCGAGTTAACTCATGTACATTCGATTGAGAGTAATGTGAGGACGGGCGATCAGTGTGGCACGAGACAAAATTCATCAATGCCTCAATGTCAAAGTTCTGAGTCCAATGGACAGAACTTAGGATGCAACTATCCTAAAAGCCAAGGAGAATCACGTTCTAAGAACGTTCAAGGTAAGAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCAGTTCTCCAAAGAGTAACAACCATAATGCTCGAAAGGATGGGAGCCACGGTCATTGCTTTCGGAGACGGATTGCAGGCTGTTGAAGCTCTGACTGCCATGGTCAGTGCTGAAGAGCAAAGAAGGGAATTCCCCACAAGATATGACTTGATTTTAATGGATTGCCAAATGCCAAAGATGGATGGCTATGAAGCAACAAAAGCAATTAGAAAGCTAGAAGCAGGAACGAGCCTTCACGTTCCAATTGTAGCATTGACAGCCCACGCAATGTCATCAGATGAAGCCAAATGCTTGGAGGTAGGAATGGATGCCTACCTAACAAAGCCAATTGACTATAAGCTGATGCACCAGATAGAGATGGTTAGCAATGAAGAGTGTAAAGTTGCTGGCAGAACTAGTTGGGTTATTTCTGTCCATTGA 3708 42.42 MAEEDTPSESSEPSSSSSALTSSMSTPLRKVFCRISGLATSLRRNTAPRSRRIFHRDVEQQEFQYGSSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPVNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATQSYNINRLSSGEGWSEPPIHGNVSAKWFREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSSGPKLMMAADSQDDVIRLGAEWLQKTYGNNFPPGHEVHEENVKLGDKQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDNMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKETGKFCMDQKKSRFPNRTKMKQQGDHTKNAFKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPADSTDHHCQFDFAKHNAVVLLALRGSMSRLITSQWLRKIGLFTLEASEWNELTLILQELFQAKSSENKKGFSPQDSLGETLRAELMRIKDMKSQIFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYRSKMIHILEAVMKDRNLELQRKNALRTASKEGDYHECLEIDSTQFETASSDDSDVSELGNPDSQCATFEVRDSQEETTPKPRQSPFLPINNSLVELTHVHSIESNVRTGDQCGTRQNSSMPQCQSSESNGQNLGCNYPKSQGESRSKNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGATVIAFGDGLQAVEALTAMVSAEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEAGTSLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMHQIEMVSNEECKVAGRTSWVISVH 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 968310 974143 - ClG42_10g0006000.10 Clacu10g0060 258684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0060 1235 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 561 768 IPR036890 -
Clacu10g0060 1235 CDD REC_hyHK_CKI1_RcsC-like 1090 1214 - -
Clacu10g0060 1235 Pfam Response regulator receiver domain 1090 1213 IPR001789 GO:0000160(InterPro)
Clacu10g0060 1235 MobiDBLite consensus disorder prediction 7 23 - -
Clacu10g0060 1235 PANTHER TWO-COMPONENT HISTIDINE KINASE 52 777 IPR050736 -
Clacu10g0060 1235 FunFam Histidine kinase 1-like protein 494 573 - -
Clacu10g0060 1235 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 494 573 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu10g0060 1235 SMART REC_2 1088 1214 IPR001789 GO:0000160(InterPro)
Clacu10g0060 1235 PRINTS Bacterial sensor protein C-terminal signature 714 724 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu10g0060 1235 PRINTS Bacterial sensor protein C-terminal signature 731 749 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu10g0060 1235 PRINTS Bacterial sensor protein C-terminal signature 696 710 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu10g0060 1235 ProSiteProfiles Response regulatory domain profile. 1089 1219 IPR001789 GO:0000160(InterPro)
Clacu10g0060 1235 SUPERFAMILY CheY-like 1086 1212 IPR011006 -
Clacu10g0060 1235 SMART HisKA_10 506 572 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu10g0060 1235 Gene3D - 1066 1223 - -
Clacu10g0060 1235 MobiDBLite consensus disorder prediction 1038 1080 - -
Clacu10g0060 1235 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 768 IPR003594 -
Clacu10g0060 1235 SMART HKATPase_4 619 771 IPR003594 -
Clacu10g0060 1235 Pfam His Kinase A (phospho-acceptor) domain 507 572 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu10g0060 1235 MobiDBLite consensus disorder prediction 1038 1078 - -
Clacu10g0060 1235 MobiDBLite consensus disorder prediction 1 23 - -
Clacu10g0060 1235 CDD HisKA 507 568 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu10g0060 1235 Gene3D - 494 573 - -
Clacu10g0060 1235 Gene3D - 574 773 IPR036890 -
Clacu10g0060 1235 ProSiteProfiles Histidine kinase domain profile. 513 771 IPR005467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0060 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0278 Clacu-Chr2:2520926 Clacu10g0060 Clacu-Chr10:968310 4.30E-41 dispersed
Clacu02g1534 Clacu-Chr2:28791465 Clacu10g0060 Clacu-Chr10:968310 5.00E-68 dispersed
Clacu10g0060 Clacu-Chr10:968310 Clacu11g0252 Clacu-Chr11:2280269 3.00E-42 dispersed
Clacu10g0060 Clacu-Chr10:968310 Clacu02g0966 Clacu-Chr2:13310264 8.10E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g0060 . 5 1211 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1439.5
Clacu11g0252 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Clacu01g0671 . 24 971 Histidine Kinase Gene Family AT2G01830 71.5 0.0e+00 1296.2
Clacu02g0278 . 290 1242 Histidine Kinase Gene Family AT2G01830 53.7 2.3e-277 952.2
Clacu06g0219 . 97 1023 Histidine Kinase Gene Family AT2G01830 53.7 5.7e-268 921.0
Clacu02g0966 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.9 6.9e-266 914.1
Clacu05g1754 . 1 997 Histidine Kinase Gene Family AT5G10720 57.3 8.4e-292 1000.0
Clacu08g1060 . 115 1234 Histidine Kinase Gene Family AT1G09570 80.2 0.0e+00 1831.6
Clacu08g1064 . 18 1141 Histidine Kinase Gene Family AT1G09570 71.5 0.0e+00 1612.4
Clacu02g0294 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1205.3
Clacu05g0764 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1196.0
Clacu05g0764 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1670.6
Clacu03g0719 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.8 0.0e+00 1243.0
Clacu08g1060 . 135 1168 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1090.1
Clacu02g0294 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.2 0.0e+00 1078.2
Clacu08g1064 . 23 1075 Histidine Kinase Gene Family AT2G18790 50.7 5.4e-309 1057.4
Clacu02g0294 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.6 0.0e+00 1362.4
Clacu05g0764 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.9 0.0e+00 1152.5
Clacu08g1060 . 123 1228 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1117.1
Clacu05g0764 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.7 0.0e+00 1708.7
Clacu03g0719 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1282.7
Clacu08g1060 . 122 1229 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1137.9
Clacu02g0294 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.5 0.0e+00 1117.4
Clacu03g0719 . 15 1113 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1370.5
Clacu05g0764 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1272.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48420 PF02518 HATPase_c 6.90E-23 CL0025 Clacu TR