Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0071 ATGGCTTCCATTTCTTCTTCTCTTCTTTCTCTCTTCCTCTTCTTCCCTTTCTTTTCAGGTGTAAATTCAGCAACTTTCACCATTTTAAATCAGTGTGGTTACACAGTGTGGCCGGGAGTTTTGTCCGGCGCCGGCACATCACAGCTCTCCACCACCGGCTTCGTCCTGCAGACAGGACAGTCCAACGTCCTCACCATGCCCCCGGCATGGTCCGGCCGTATTTGGGGCCGCACTTATTGCTCCCAAGATGCCGCCGGCAGATTCTCCTGCGCCACTGCCGACTGCGGCTCCGGCGTCGTCGAATGCAATGGTGCTGGTGCTACCCCCCCCGCCACCCTTGCCGAGTTCACTCTCAATGGCGCCGGTGGGCTTGATTTCTTCGATGTCAGCCTTGTTGATGGATACAATGTGCCCATGTTAATCACCCCACAAGATGGAACAGGTGGAGGAAATTGCACGACCATTGGGTGTGCGACAGATTTAAATAGCGAGTGTCCACCGGAGCTAAGAGTGGTGGCAAGTGACGCCGGTGGGCGAGGCATAGCGTGTAAGAGCGCATGTGGCGCATTTGGTGACGCACAATATTGTTGTAGTGGCGAATATGGAAATCCAAACACTTGTCGACCGTCATCTTACTCACAGTTCTTCAAGTCCGCATGTCCTCAAGCTTATAGTTATGCCTACGATGACGGTACCAGTACATTCACTTGCACTTCTGCCAATTACCTCATCACTTTCTGTCCTTCTCTTTCAACTAGGTGCGTCATTAAACCTTGTGAAATCATCAAACGGGCAGTATCCTCGGGCAGTGGACATCTCAAGAGCCGAGCATTCGGGCAGACCGTTGACGTCAGTAGCCGTTATTTCCACCGTGACGGCAGCTCTAAGTCGGCGATTTTTTAG 903 52.38 MASISSSLLSLFLFFPFFSGVNSATFTILNQCGYTVWPGVLSGAGTSQLSTTGFVLQTGQSNVLTMPPAWSGRIWGRTYCSQDAAGRFSCATADCGSGVVECNGAGATPPATLAEFTLNGAGGLDFFDVSLVDGYNVPMLITPQDGTGGGNCTTIGCATDLNSECPPELRVVASDAGGRGIACKSACGAFGDAQYCCSGEYGNPNTCRPSSYSQFFKSACPQAYSYAYDDGTSTFTCTSANYLITFCPSLSTRCVIKPCEIIKRAVSSGSGHLKSRAFGQTVDVSSRYFHRDGSSKSAIF 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1032698 1035425 - ClG42_10g0007100.10 Clacu10g0071 258695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0071 300 Pfam Thaumatin family 30 248 IPR001938 -
Clacu10g0071 300 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Clacu10g0071 300 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Clacu10g0071 300 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Clacu10g0071 300 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Clacu10g0071 300 FunFam THAUMATIN-LIKE PROTEIN 1 24 248 - -
Clacu10g0071 300 CDD TLP-PA 25 247 - -
Clacu10g0071 300 PANTHER OS03G0233200 PROTEIN 12 248 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Clacu10g0071 300 SMART tha2 26 248 IPR001938 -
Clacu10g0071 300 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Clacu10g0071 300 PIRSF PR5 1 284 IPR001938 -
Clacu10g0071 300 ProSiteProfiles Thaumatin family profile. 23 248 IPR001938 -
Clacu10g0071 300 Gene3D Thaumatin 24 248 IPR037176 -
Clacu10g0071 300 SUPERFAMILY Osmotin, thaumatin-like protein 24 249 IPR037176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2101 Clacu-Chr1:32709313 Clacu10g0071 Clacu-Chr10:1032698 6.10E-93 dispersed
Clacu08g1588 Clacu-Chr8:25687075 Clacu10g0071 Clacu-Chr10:1032698 1.50E-91 dispersed
Clacu10g0071 Clacu-Chr10:1032698 Clacu10g1961 Clacu-Chr10:33145580 4.60E-66 dispersed
Clacu10g0070 Clacu-Chr10:1019694 Clacu10g0071 Clacu-Chr10:1032698 1.00E-79 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0071 - - - 0.0