Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0086 ATGGGCAGGATGGGAGGAAGGCAAAGGACTTACACCGCTAATTCCAGTGATTATAAGCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCTACTGTTTTTAGAGCGATCTATACTCCGTCAAATGAAGTCGTCGCCATCAAGTGTTTGGATCTTGATCGCTGCAATAGTAATCTTGATGATATACGTAGGGAGGCTCAAACAATGAGTTTGATAGATCATCCAAACCTTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGTTCTTGTTTGCACCTAATGAAGACAGCGTACTCAGATGGCTTTGAAGAGGTTGCTATTGGTTCTATCTTGAAAGAGACTCTTAAAGCTTTGGAGTACCTTCATCGCCAAGGGCACATACATCGGGATGTCAAGGCTGGAAATATACTACTTGATAGTAATGGGTCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAGCGCTCCAGAAATACCTTTGTGGGAACCCCATGCTGGATGGCACCGGAGGTATTGCAACCAGGAACTGGATATAATTCCAAGGCTGATATTTGGTCCTTTGGTATTACAGCTTTGGAGTTGGCTCATGGTCATGCACCATTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGAGATAAACGGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAACCAAGAGGCCAACAGCTGAGAAACTTTTAAAGCACTCCTTTTTCAAGAATGCTAAGCCTCCAGAGGTTTCTTTGAAGAAACTATTTGCTAACTTGCCTCCTCTTTCACATCGTGTAAAGGAGCTGCAGCTTAAGGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTTGATGTCGAGGATTTGAAAGCCCAAGCTTCCCTGGTGAATGATGATATGGCAGAGATGAAGGAAGAGGAGGAGAGTATAAATTCTTGTAGTGTTAAGGATGCCTTCTGTCCTCAAGCTAGTATGAAGAATTTCAATTCATGTAATGAATCATATCAGGATGAGCATGGAGTAGGGGCAAGTGGTCAGGGATTGTCACAAGTAGAGTGCTTGAGCAAAAAGGGAAACTCTATGGAAAGTGATATGCTGAAAGCTGGGTTGCAAGAAAAAACTGGATGGAAGAGAAATGGAACTAGCAATGAAGCAGAAGCATCTACCTCTGGCCAAGACATTGTACAAGGCAAGACCAAAACCCAACTGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTCTACCTGGCACTGTGCTCAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCTGCTGAAAAAAATCGTCGAGAAGCACGGCAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAACCGCGCCTCTGCAAACAGCCTATCAGCTCCAATTAAACCTTCTGGAGGGTTTAGAGATTCAATGGATGACAAATCCAAAGCTAATCTTGTGCAAATTAAGGGACGTTTTTCAGTGACGTCAGAGAACCTAGATCTCGTAAAGGATATTCCATTGAGCACGGTTTCACGTCGATCTTCACAGAACTCTCCTCTACGAAAGTCAGCTAGTGTTGGTGATTGGATATTCGATTCCAAGCAGTCTGTCAGCCAACAACCCCCTAAGGAGGCTTGCAACGTCAACGTGCCTACATCAATTCTTTTGCCTCATCTTCAGAATCTTTTCCATCAGACCTCAATTCAGCAGGATCTTATAGTGAACTTGTTGAATAGCTTACAAGCAGCAGACGTGGTTGATGCTTCTCAAAACGGAAAGTTGCCTCCATTGCCCCGAAGCTCGGAGAATAATGGAAGTGCTGAAACAGCTGCCGTTGAGAGAGAGCGCTTACTGCTTCGGAAAGTCTCTGAACTCCAAGCTAGAATGACGCATTTGACTTATGAATTGACCGCTGAAAAGTTGAAATACATTCAATTACAAGAGCAGTTCAACTCGGCATCTGGTCAGGAAGAAAACGAGATCAAGAGGGAAGAAAATGTATGA 2196 43.62 MGRMGGRQRTYTANSSDYKLLEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAYCSFVVERNLWVVMPFMAEGSCLHLMKTAYSDGFEEVAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGSVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKRFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKNAKPPEVSLKKLFANLPPLSHRVKELQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDMAEMKEEEESINSCSVKDAFCPQASMKNFNSCNESYQDEHGVGASGQGLSQVECLSKKGNSMESDMLKAGLQEKTGWKRNGTSNEAEASTSGQDIVQGKTKTQLPKGRQTQSGPLLPGTVLSHSLSERVRGSERFDSEIQPSAEKNRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGFRDSMDDKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSSQNSPLRKSASVGDWIFDSKQSVSQQPPKEACNVNVPTSILLPHLQNLFHQTSIQQDLIVNLLNSLQAADVVDASQNGKLPPLPRSSENNGSAETAAVERERLLLRKVSELQARMTHLTYELTAEKLKYIQLQEQFNSASGQEENEIKREENV 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1161444 1171988 + ClG42_10g0008600.10 Clacu10g0086 258710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0086 731 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0086 731 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 9 710 IPR047173 GO:0043539(InterPro)
Clacu10g0086 731 MobiDBLite consensus disorder prediction 427 521 - -
Clacu10g0086 731 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Clacu10g0086 731 FunFam Serine/threonine-protein kinase BLUS1 7 95 - -
Clacu10g0086 731 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 99 329 - -
Clacu10g0086 731 MobiDBLite consensus disorder prediction 655 674 - -
Clacu10g0086 731 MobiDBLite consensus disorder prediction 432 475 - -
Clacu10g0086 731 MobiDBLite consensus disorder prediction 658 672 - -
Clacu10g0086 731 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0086 731 Gene3D Transferase(Phosphotransferase) domain 1 99 330 - -
Clacu10g0086 731 Coils Coil 343 363 - -
Clacu10g0086 731 CDD STKc_OSR1_SPAK 16 279 - -
Clacu10g0086 731 MobiDBLite consensus disorder prediction 483 507 - -
Clacu10g0086 731 SUPERFAMILY Protein kinase-like (PK-like) 16 334 IPR011009 -
Clacu10g0086 731 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Clacu10g0086 731 SMART serkin_6 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0086 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1946 Clacu-Chr9:34349714 Clacu10g0086 Clacu-Chr10:1161444 2.30E-150 dispersed
Clacu10g0086 Clacu-Chr10:1161444 Clacu11g1974 Clacu-Chr11:30675950 7.10E-60 dispersed
Clacu10g0086 Clacu-Chr10:1161444 Clacu05g0512 Clacu-Chr5:4272361 8.90E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g233 . . . . . . . . Cmo06g00591 Cmo16g01275 . . . . . Cpe14g01015 . . . . . . . . Cla10g00086 Cam10g0085 Cec10g0089 Cco10g0091 Clacu10g0086 Cmu10g0933 Cre10g0347 Cone8ag0554 Cone12ag0553 . . Lsi07g01112 . . Cme06g02392 . . . . . . . Bma12g00254 . . . Cma06g00588 . Car06g00520 Car16g01157 Cpe08g00914 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu11g1974 . 99 786 MAP Kinase Kinase Kinase Kinase AT1G53165 63.7 3.0e-225 778.5
Clacu07g0694 . 326 586 MAP Kinase Kinase Kinase Kinase AT1G53165 53.4 3.9e-68 256.5
Clacu11g1352 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 7.4e-67 252.3
Clacu11g1974 . 99 783 MAP Kinase Kinase Kinase Kinase AT3G15220 65.9 3.6e-231 798.1
Clacu07g0694 . 326 586 MAP Kinase Kinase Kinase Kinase AT3G15220 51.9 1.8e-68 257.7
Clacu11g1352 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 3.3e-67 253.4
Clacu07g0694 . 60 898 MAP Kinase Kinase Kinase Kinase AT1G69220 58.0 3.1e-242 835.1
Clacu11g1352 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 1.2e-241 833.2
Clacu09g1946 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 5.6e-253 870.5
Clacu05g0512 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.5e-96 350.9
Clacu10g0086 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 5.8e-248 854.0
Clacu10g0086 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.8 2.8e-247 851.7
Clacu10g0086 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 4.7e-118 422.2
Clacu09g1946 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.6e-103 372.9
Clacu10g0086 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.3e-75 280.0
Clacu05g0512 . 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.0 2.6e-143 505.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005064 3 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73858 PF00069 Pkinase 3.90E-61 CL0016 Clacu PK