Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0089 ATGTCTGCTGCCATACTTTACAGCAGCAAGATCCATAGTGTAATCTGCTATCAGTACAAAGTTGGAGATTTGGATGCTTGGGGTCTTCCCGCTCCAGGAAACTCCCAGATCTACATGTATTGGTCTAAATATCACTCTCTCAAGATTGGTGATTCTCTCATGTTCTTGTACCCACCAAGCGAAGATTCAGTGATTCAAGTTACAAAAGAATCTTACAACAGCTGCAATCTCAAGGATCCAATCTTGTACATGAAAGATGGCAACTCTCTTTTTAACATTACTGATTATGGGGATTTGTTCTTCACAAGTGGAGTTGCAGGTCATTGTGAGAAGAATCAGAAGCTTCATATTTCTGTTCTTTCTGGAAATGGTTCTTCTGCTAGTGCTCCTTCTTCTGACGGTGCACTTCCTGAGATTTCTCCCTCTTACCCCACAGTTTTTGGTGGAATCCCAGCAGCTCCCAATGCCAATTCCAGTTCTTCCTCTTCCTCCTCCTTGCCTAAAAAAAGCCTTTTCTTCCTCCTGCTTTCATTGCTGCAGCTTTTGCTGGGCTAG 555 43.06 MSAAILYSSKIHSVICYQYKVGDLDAWGLPAPGNSQIYMYWSKYHSLKIGDSLMFLYPPSEDSVIQVTKESYNSCNLKDPILYMKDGNSLFNITDYGDLFFTSGVAGHCEKNQKLHISVLSGNGSSASAPSSDGALPEISPSYPTVFGGIPAAPNANSSSSSSSSLPKKSLFFLLLSLLQLLLG 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1180383 1181223 + ClG42_10g0008900.10 Clacu10g0089 258713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0089 184 CDD OsENODL1_like 17 120 IPR041846 -
Clacu10g0089 184 ProSiteProfiles Phytocyanin domain profile. 17 121 IPR003245 GO:0009055(InterPro)
Clacu10g0089 184 Gene3D - 17 132 IPR008972 -
Clacu10g0089 184 FunFam Early nodulin-like protein 1 16 124 - -
Clacu10g0089 184 PANTHER BLUE COPPER PROTEIN 15 137 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Clacu10g0089 184 SUPERFAMILY Cupredoxins 16 120 IPR008972 -
Clacu10g0089 184 Pfam Plastocyanin-like domain 36 112 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0089 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0089 Clacu-Chr10:1180383 Clacu11g1982 Clacu-Chr11:30778962 8.40E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g224 . . . . . . Bma07g01016 . Cmo06g00593 . . . . . . . . . . . . . . . Cla10g00088 Cam10g0088 Cec10g0092 Cco10g0094 Clacu10g0089 Cmu10g0936 Cre10g0350 Cone8ag0534 . . . Lsi07g01117 . . Cme06g02397 . Blo19g00144 . . Bpe08g00893 . . . . . . Cma06g00591 . . . Cpe08g00912 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014226 0 0 1 1 0 1 1 1 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 23