Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0107 ATGGCAGCGTCAATGGCGCCGTCTAAGCTGACGGAAGGAGCAGTGAGGGTGATATGTAAGAGGGAATCATCGGCAGAGACGTTCCAGCCGATTCTACAAGTAATTGACTTGAAATTGGTTAACACTTCGCAACAATCGGGCAGCGAGAGGTTCAGATTGTTGGTTTCTGATGGAACCCATTACCAGCAAGGAATGCTTGGCACTCAGCTCAATGAATTGGTTAAGTCCGGGAAGTTACAGATAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTTATTGAATTGGATGTGATAGAGGAAATGTGTGAACGTATTGGTGACCCTGTATCAGCGACAAGATCGGTAACTGGTGCATTTAGTGGAAACCCCCTATCCACTGTGGGGGGCCTGGGGGCTTCACCTGGCAGTGGAATAATTGGTAAGGTGAATGTATCTAATGCGTCTTTTGAACAGCCTAAAGTGAACCAGTCACATGTACCGCCTATGGGATCTTATTCTAACCTTCCTGAGTCTGGAAGATACTCTGCATCAATTGCGCCTCCTCCTTACTCTAAGACCGATCCTGGAACAAGGTTTAACGGGTCATCTCCTTTAACTGGATCATATGGTGACCAGAAGATGGCATATCACAACAGTGGATCAGATATGCCCAGGCCACCTCTAAATGCTTATGCCCGTCCTCAGCCAATATATCAGCAGCCGCCTCCAATGTACAGTAATAGAGGACCAGTAGCAAAAAATGAAGCTGCCCCAAGGATAATGCCTATTGCTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAATAATCCTCGTGGTGACGGGAAAGTGTTTTCATTTGATTTACTTGATGCATACCGTGGAGAAATACGAGTAACATGCTTCAATACAGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTATAACCATCTAAAAAATGACTATGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAACAGCAGTTTCATTTCCATCAGATCAGTGAGATCGAGGGCATGGACAGCAACAGTGTTGTAGACGTAATTGGTATTGTTTCTTCCATTAATCCTGCAACTTCTTTAATGAGAAAAAATGGCACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCCGGTCGAAGTGTTGAATTGACTCTTTGGGGAAACTTCTGTCAAGCGGAAGGGCAAAGATTGCAAAATATGTGTGACTCAGGGTTGTTCCCAGTTTTGGCTGTGAAATCTAGCAGAGTGAGCGACTTCAATGGGAAGGCAGTGGGAACCATTTCAACAAGTCAGCTTTTTGTAGAGCCAGATTTCCCTGAGGCTCGTACGCTAAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCTTCTGTCTCTATATCCAGGGAAGTTGCTAGTGTGGGCAGGACAGATGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACGGTTAGTGCAACTGTTTCATTTATTAAGGTGGACAATTTCTGTTACACAGCATGTCCTATCATGATTGGGGATCGACAATGCAGCAAAAAGGTTACGAATAATGGAGATGGAAAATGGAGATGTGACAGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTGCAGCTCCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAACAAGATGATGAGAAATTTGCTGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATTATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGATCAACAGTGATGAAAGCAGAAAGCATTGATTTTTCGACCGAGTCCAGGTTTCTTCTAGATTTGATGGATAAACTCGGGGCAGAGAACACTAGTTCTGTTACCCCAAAGGCAGAAAACACCATACATAATCTCGGATTTCGTGACCGCTCTGGGAATATTGGTGGTGGACAGTTGGTATCACCCATTCGAAATAGCACCAATGTCAGCAGAGACTATGGCACACCCAACCAAGGTGTTCAGTATGGGAACCAGTACAGCAGCTCTAGGCCTTCTCCATCCACACAGTTTAACTCGACCACGTACTGCAACAGCTGTGGGGGCTCTGGCCACAGCTCAACAAACTGCCCAAGTATTATGAGCGGTCCTGCGCTATCTGTTGGAGGGGGGATGTATTCAAATAGAGCTTCTGGTCCTTCTGGTGGTGCCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCATTGGGCTAGGGATTGTCCTGGTTTGGCCTCTGTCCCTCCAGCTTATGGCAACAGCAGCTTCACGGCTAGGTGA 2577 44.39 MAASMAPSKLTEGAVRVICKRESSAETFQPILQVIDLKLVNTSQQSGSERFRLLVSDGTHYQQGMLGTQLNELVKSGKLQIGSIVRLRQYVCNPVQERLIIIVIELDVIEEMCERIGDPVSATRSVTGAFSGNPLSTVGGLGASPGSGIIGKVNVSNASFEQPKVNQSHVPPMGSYSNLPESGRYSASIAPPPYSKTDPGTRFNGSSPLTGSYGDQKMAYHNSGSDMPRPPLNAYARPQPIYQQPPPMYSNRGPVAKNEAAPRIMPIAALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLKNDYEIFLENTSTIQPCFEDDQSIPQQQFHFHQISEIEGMDSNSVVDVIGIVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFVEPDFPEARTLREWFEKEGRSTPSVSISREVASVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVMKAESIDFSTESRFLLDLMDKLGAENTSSVTPKAENTIHNLGFRDRSGNIGGGQLVSPIRNSTNVSRDYGTPNQGVQYGNQYSSSRPSPSTQFNSTTYCNSCGGSGHSSTNCPSIMSGPALSVGGGMYSNRASGPSGGASGECFKCHQTGHWARDCPGLASVPPAYGNSSFTAR 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1330248 1334033 + ClG42_10g0010700.10 Clacu10g0107 258731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0107 858 CDD RPA1_DBD_B 398 505 - -
Clacu10g0107 858 Gene3D - 778 845 - -
Clacu10g0107 858 FunFam Replication protein A subunit 263 373 - -
Clacu10g0107 858 NCBIfam replication factor-a protein 1 (rpa1) 243 705 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Clacu10g0107 858 Gene3D - 263 372 IPR012340 -
Clacu10g0107 858 Gene3D - 515 706 IPR012340 -
Clacu10g0107 858 PANTHER REPLICATION FACTOR A 1, RFA1 266 682 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Clacu10g0107 858 SUPERFAMILY Nucleic acid-binding proteins 529 706 IPR012340 -
Clacu10g0107 858 MobiDBLite consensus disorder prediction 199 219 - -
Clacu10g0107 858 FunFam Replication protein A subunit 376 514 - -
Clacu10g0107 858 Pfam Replication factor-A protein 1, N-terminal domain 10 110 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Clacu10g0107 858 Gene3D - 376 514 IPR012340 -
Clacu10g0107 858 FunFam Replication protein A subunit 515 706 - -
Clacu10g0107 858 SUPERFAMILY Retrovirus zinc finger-like domains 808 846 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu10g0107 858 Gene3D - 8 123 IPR012340 -
Clacu10g0107 858 FunFam Replication protein A subunit 9 123 - -
Clacu10g0107 858 SMART c2hcfinal6 782 798 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu10g0107 858 SMART c2hcfinal6 826 842 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu10g0107 858 ProSiteProfiles Zinc finger CCHC-type profile. 783 798 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu10g0107 858 Pfam Replication factor-A C terminal domain 548 699 IPR013955 -
Clacu10g0107 858 SUPERFAMILY Nucleic acid-binding proteins 263 376 IPR012340 -
Clacu10g0107 858 ProSiteProfiles Zinc finger CCHC-type profile. 827 841 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu10g0107 858 MobiDBLite consensus disorder prediction 162 253 - -
Clacu10g0107 858 MobiDBLite consensus disorder prediction 162 184 - -
Clacu10g0107 858 SUPERFAMILY Nucleic acid-binding proteins 382 510 IPR012340 -
Clacu10g0107 858 CDD RPA1_DBD_A 266 369 - -
Clacu10g0107 858 Pfam Zinc knuckle 826 841 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu10g0107 858 Pfam OB-fold nucleic acid binding domain 277 361 IPR004365 GO:0003676(InterPro)
Clacu10g0107 858 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Clacu10g0107 858 CDD RPA1_DBD_C 532 705 IPR047192 -
Clacu10g0107 858 CDD RPA1N 13 109 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Clacu10g0107 858 Pfam Replication protein A OB domain 387 490 IPR031657 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0107 K07466 - - csv:101211358 1587.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0107 Clacu-Chr10:1330248 Clacu11g0299 Clacu-Chr11:2721104 5.20E-195 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g886 . . . . . Bpe07g00251 . . Cmo06g00609 Cmo16g01260 . . . . . Cpe14g01003 . . . . . . . . Cla10g00108 Cam10g0103 Cec10g0110 Cco10g0112 Clacu10g0107 Cmu10g0955 Cre10g0366 . . . . Lsi07g01137 . . Cme06g02413 . . . . . . . Bma12g00253 . . . Cma06g00602 Cma16g01216 Car06g00537 Car16g01142 . . . . . . . . . . . . . . . . . Csa03g00107 Chy06g02198 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g0027 . 106 784 Core DNA Replication Machinery Family AT4G14700 67.0 1.2e-265 912.9
Clacu08g0027 . 106 784 Core DNA Replication Machinery Family AT4G12620 69.3 6.3e-275 943.7
Clacu08g1734 . 55 408 Core DNA Replication Machinery Family AT2G37560 65.0 3.4e-137 485.0
Clacu07g0481 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.5e-152 535.0
Clacu06g0361 . 3 531 Core DNA Replication Machinery Family AT4G29910 58.0 9.1e-172 600.5
Clacu11g0941 . 1 283 Core DNA Replication Machinery Family AT1G26840 65.7 1.9e-93 339.3
Clacu09g2284 . 68 861 Core DNA Replication Machinery Family AT1G79150 59.4 4.8e-246 847.8
Clacu10g1298 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1354.0
Clacu01g2525 . 120 694 Core DNA Replication Machinery Family AT5G46280 80.9 1.4e-268 922.2
Clacu02g0508 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1153.7
Clacu11g0494 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Clacu01g2678 . 7 801 Core DNA Replication Machinery Family AT5G44635 73.3 0.0e+00 1152.9
Clacu09g0515 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Clacu02g2016 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.3e-163 571.2
Clacu02g2016 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.5e-143 505.8
Clacu09g0874 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 1.1e-257 885.9
Clacu10g2027 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1081.2
Clacu09g1643 . 9 629 Core DNA Replication Machinery Family AT2G14050 78.9 2.4e-285 978.0
Clacu02g1224 . 1908 2318 Core DNA Replication Machinery Family AT2G20980 56.4 1.1e-118 423.7
Clacu09g0268 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Clacu11g0765 . 635 793 Core DNA Replication Machinery Family AT1G19080 69.8 2.1e-61 232.3
Clacu11g0765 . 635 793 Core DNA Replication Machinery Family AT3G55490 69.8 2.1e-61 232.3
Clacu05g0167 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.5e-49 193.0
Clacu02g1274 . 1 1538 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1750.3
Clacu04g1224 . 151 773 Core DNA Replication Machinery Family AT1G67630 60.7 4.3e-215 744.6
Clacu06g0210 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.5 5.8e-183 637.5
Clacu08g0161 . 48 491 Core DNA Replication Machinery Family AT5G41880 65.0 1.3e-176 616.3
Clacu01g1579 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.3
Clacu10g1736 . 1 419 Core DNA Replication Machinery Family AT2G42120 75.9 3.2e-196 681.4
Clacu06g0210 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.5 5.8e-183 637.5
Clacu01g0553 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.8 3.2e-37 151.4
Clacu02g2254 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2981.8
Clacu09g2081 . 7 2057 Core DNA Replication Machinery Family AT1G08260 68.7 0.0e+00 2819.3
Clacu02g2254 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2948.3
Clacu09g2081 . 29 2148 Core DNA Replication Machinery Family AT2G27120 65.8 0.0e+00 2773.0
Clacu04g1335 . 638 1059 Core DNA Replication Machinery Family AT5G22110 67.0 8.2e-169 590.5
Clacu02g2304 . 50 974 Core DNA Replication Machinery Family AT5G22010 63.0 1.1e-304 1042.7
Clacu10g0345 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 3.7e-173 604.4
Clacu04g0492 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Clacu11g1775 . 66 384 Core DNA Replication Machinery Family AT1G21690 81.6 2.1e-144 508.8
Clacu08g0732 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.5 2.5e-154 542.0
Clacu11g0299 . 26 607 Core DNA Replication Machinery Family AT2G06510 67.9 6.7e-245 843.6
Clacu10g0107 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.4 9.8e-196 680.2
Clacu06g1663 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 9.8e-249 856.3
Clacu10g0107 . 10 811 Core DNA Replication Machinery Family AT5G45400 50.2 8.7e-227 783.9
Clacu06g1663 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.1 7.8e-241 830.1
Clacu10g0107 . 5 797 Core DNA Replication Machinery Family AT4G19130 53.7 2.2e-224 775.8
Clacu03g1825 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.5 1.0e-188 656.4
Clacu05g0312 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.3 8.9e-298 1020.0
Clacu07g1578 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 1.3e-115 412.9
Clacu02g2212 . 2 740 Core DNA Replication Machinery Family AT1G08130 69.4 8.2e-288 986.5
Clacu02g2212 . 162 740 Core DNA Replication Machinery Family AT1G49250 69.3 2.8e-233 805.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008728 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35