Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0107 ATGGCAGCGTCAATGGCGCCGTCTAAGCTGACGGAAGGAGCAGTGAGGGTGATATGTAAGAGGGAATCATCGGCAGAGACGTTCCAGCCGATTCTACAAGTAATTGACTTGAAATTGGTTAACACTTCGCAACAATCGGGCAGCGAGAGGTTCAGATTGTTGGTTTCTGATGGAACCCATTACCAGCAAGGAATGCTTGGCACTCAGCTCAATGAATTGGTTAAGTCCGGGAAGTTACAGATAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTTATTGAATTGGATGTGATAGAGGAAATGTGTGAACGTATTGGTGACCCTGTATCAGCGACAAGATCGGTAACTGGTGCATTTAGTGGAAACCCCCTATCCACTGTGGGGGGCCTGGGGGCTTCACCTGGCAGTGGAATAATTGGTAAGGTGAATGTATCTAATGCGTCTTTTGAACAGCCTAAAGTGAACCAGTCACATGTACCGCCTATGGGATCTTATTCTAACCTTCCTGAGTCTGGAAGATACTCTGCATCAATTGCGCCTCCTCCTTACTCTAAGACCGATCCTGGAACAAGGTTTAACGGGTCATCTCCTTTAACTGGATCATATGGTGACCAGAAGATGGCATATCACAACAGTGGATCAGATATGCCCAGGCCACCTCTAAATGCTTATGCCCGTCCTCAGCCAATATATCAGCAGCCGCCTCCAATGTACAGTAATAGAGGACCAGTAGCAAAAAATGAAGCTGCCCCAAGGATAATGCCTATTGCTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAATAATCCTCGTGGTGACGGGAAAGTGTTTTCATTTGATTTACTTGATGCATACCGTGGAGAAATACGAGTAACATGCTTCAATACAGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTATAACCATCTAAAAAATGACTATGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAACAGCAGTTTCATTTCCATCAGATCAGTGAGATCGAGGGCATGGACAGCAACAGTGTTGTAGACGTAATTGGTATTGTTTCTTCCATTAATCCTGCAACTTCTTTAATGAGAAAAAATGGCACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCCGGTCGAAGTGTTGAATTGACTCTTTGGGGAAACTTCTGTCAAGCGGAAGGGCAAAGATTGCAAAATATGTGTGACTCAGGGTTGTTCCCAGTTTTGGCTGTGAAATCTAGCAGAGTGAGCGACTTCAATGGGAAGGCAGTGGGAACCATTTCAACAAGTCAGCTTTTTGTAGAGCCAGATTTCCCTGAGGCTCGTACGCTAAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCTTCTGTCTCTATATCCAGGGAAGTTGCTAGTGTGGGCAGGACAGATGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACGGTTAGTGCAACTGTTTCATTTATTAAGGTGGACAATTTCTGTTACACAGCATGTCCTATCATGATTGGGGATCGACAATGCAGCAAAAAGGTTACGAATAATGGAGATGGAAAATGGAGATGTGACAGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTGCAGCTCCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAACAAGATGATGAGAAATTTGCTGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATTATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGATCAACAGTGATGAAAGCAGAAAGCATTGATTTTTCGACCGAGTCCAGGTTTCTTCTAGATTTGATGGATAAACTCGGGGCAGAGAACACTAGTTCTGTTACCCCAAAGGCAGAAAACACCATACATAATCTCGGATTTCGTGACCGCTCTGGGAATATTGGTGGTGGACAGTTGGTATCACCCATTCGAAATAGCACCAATGTCAGCAGAGACTATGGCACACCCAACCAAGGTGTTCAGTATGGGAACCAGTACAGCAGCTCTAGGCCTTCTCCATCCACACAGTTTAACTCGACCACGTACTGCAACAGCTGTGGGGGCTCTGGCCACAGCTCAACAAACTGCCCAAGTATTATGAGCGGTCCTGCGCTATCTGTTGGAGGGGGGATGTATTCAAATAGAGCTTCTGGTCCTTCTGGTGGTGCCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCATTGGGCTAGGGATTGTCCTGGTTTGGCCTCTGTCCCTCCAGCTTATGGCAACAGCAGCTTCACGGCTAGGTGA 2577 44.39 MAASMAPSKLTEGAVRVICKRESSAETFQPILQVIDLKLVNTSQQSGSERFRLLVSDGTHYQQGMLGTQLNELVKSGKLQIGSIVRLRQYVCNPVQERLIIIVIELDVIEEMCERIGDPVSATRSVTGAFSGNPLSTVGGLGASPGSGIIGKVNVSNASFEQPKVNQSHVPPMGSYSNLPESGRYSASIAPPPYSKTDPGTRFNGSSPLTGSYGDQKMAYHNSGSDMPRPPLNAYARPQPIYQQPPPMYSNRGPVAKNEAAPRIMPIAALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLKNDYEIFLENTSTIQPCFEDDQSIPQQQFHFHQISEIEGMDSNSVVDVIGIVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFVEPDFPEARTLREWFEKEGRSTPSVSISREVASVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVMKAESIDFSTESRFLLDLMDKLGAENTSSVTPKAENTIHNLGFRDRSGNIGGGQLVSPIRNSTNVSRDYGTPNQGVQYGNQYSSSRPSPSTQFNSTTYCNSCGGSGHSSTNCPSIMSGPALSVGGGMYSNRASGPSGGASGECFKCHQTGHWARDCPGLASVPPAYGNSSFTAR 858
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 1330248 1334033 + ClG42_10g0010700.10 Clacu10g0107 258731
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0107 858 CDD RPA1_DBD_B 398 505 - -
Clacu10g0107 858 Gene3D - 778 845 - -
Clacu10g0107 858 FunFam Replication protein A subunit 263 373 - -
Clacu10g0107 858 NCBIfam replication factor-a protein 1 (rpa1) 243 705 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Clacu10g0107 858 Gene3D - 263 372 IPR012340 -
Clacu10g0107 858 Gene3D - 515 706 IPR012340 -
Clacu10g0107 858 PANTHER REPLICATION FACTOR A 1, RFA1 266 682 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Clacu10g0107 858 SUPERFAMILY Nucleic acid-binding proteins 529 706 IPR012340 -
Clacu10g0107 858 MobiDBLite consensus disorder prediction 199 219 - -
Clacu10g0107 858 FunFam Replication protein A subunit 376 514 - -
Clacu10g0107 858 Pfam Replication factor-A protein 1, N-terminal domain 10 110 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Clacu10g0107 858 Gene3D - 376 514 IPR012340 -
Clacu10g0107 858 FunFam Replication protein A subunit 515 706 - -
Clacu10g0107 858 SUPERFAMILY Retrovirus zinc finger-like domains 808 846 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu10g0107 858 Gene3D - 8 123 IPR012340 -
Clacu10g0107 858 FunFam Replication protein A subunit 9 123 - -
Clacu10g0107 858 SMART c2hcfinal6 782 798 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu10g0107 858 SMART c2hcfinal6 826 842 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu10g0107 858 ProSiteProfiles Zinc finger CCHC-type profile. 783 798 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu10g0107 858 Pfam Replication factor-A C terminal domain 548 699 IPR013955 -
Clacu10g0107 858 SUPERFAMILY Nucleic acid-binding proteins 263 376 IPR012340 -
Clacu10g0107 858 ProSiteProfiles Zinc finger CCHC-type profile. 827 841 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu10g0107 858 MobiDBLite consensus disorder prediction 162 253 - -
Clacu10g0107 858 MobiDBLite consensus disorder prediction 162 184 - -
Clacu10g0107 858 SUPERFAMILY Nucleic acid-binding proteins 382 510 IPR012340 -
Clacu10g0107 858 CDD RPA1_DBD_A 266 369 - -
Clacu10g0107 858 Pfam Zinc knuckle 826 841 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu10g0107 858 Pfam OB-fold nucleic acid binding domain 277 361 IPR004365 GO:0003676(InterPro)
Clacu10g0107 858 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Clacu10g0107 858 CDD RPA1_DBD_C 532 705 IPR047192 -
Clacu10g0107 858 CDD RPA1N 13 109 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Clacu10g0107 858 Pfam Replication protein A OB domain 387 490 IPR031657 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0107 Clacu-Chr10:1330248 Clacu11g0299 Clacu-Chr11:2721104 5.20E-195 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0107 K07466 - csv:101211358 1587.78