Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0112 ATGTGGGCCCAGGCTGTCCTCCGTGAGAATCAGCGAGTGATAGTGGAGTTAGAGAATGTCTTGTTTCTCAGTGTAACTGCAGAAATTAAGCGAGAATATGCTCTGTTCGGCGATATTTTAGGGATTTTGATTGCTGTTGTTGTTGGTTGTCATTGCTTAGTGGCGAAGAATTTTCTTGGCAGCCAAACAGTGTGCGGCGGATTTCAGTTCTATTTTCGGTGGATAAAAGCTTCGAGAGTAAAAAAAAGGCAAAACGACGGGGGTGAGGATGGGGCTGCGCGTGGGAGTGGCACGCCTAGTACAAAGGAAGCCGTCAAAAGCCTGACAACGCAGATAAAGGACATGGCGTTGAAATTCTCTGGTGCTTATAGGCAGTGCAAACCCTGCACAGGCTCCAGTAGCTATAAGAAAGGACAGAGACCTTACCCAGATTTTGACACAGCTTCAGAAGGGGTACCATACCCTTACATAGGAGGGGCAAGTGCAAGTTCAACTCCTGCTTGGGACTTCCCTCCTGTTAATCGGCACCCACATGTCAGATCTGAGTCTAGATTTAAAGGGACTTTCAGAGGAGATCAGACCCCTGGAGGCGATTCCACCATATCAGCATGTGATGTGGTGCTTGAGGATGAGGATGAGCCGAAAGAGTGGATGGCACAGGTGGAGCCTGGTGTTCACATTACTTTTGTGTCCCTACCCAATGGAGGCAATGATTTAAAACGAATTCGTTTCAATCGAGAAATGTTTAACAAATGGCAAGCTCAGCGATGGTGGGGAGAGAACTATGATAGAATAACGGAGCTCTATAATGTCCAGAGATTCAATCAACAAGCTCTTCATACGCCACCGAGAACTGAGGACGGGAGGGATTCTTCATACTCAAAGATGGGAAGGGACAGTCCGATGACTTCCGCAAACAAAGATTGGACGCCGAGAAACTATAAACCTTCTGGAAGTAAAGGATTTCCATCTGACCAGCATTTTGATCATGGAAGCAGCCACCCCTATGCAGGCTCAAGTGCCTACCCAGCAGGCAGCACCAAAGGTGACATGTCGTCTATGGAAGCATCACGCACAACTACCTCTTCTAGAGACGAACCTTCAATTTCCATTAGCAATGCAAGCGACATCGAGGCAGAATGGGTCGAGGAAGATGAGCCGGGGGTCTATATAACTATCAGGCAGCTTGTTGATGGCACTAGAGAGCTTCGTCGTGTTAGATTCAGCCGTGAAAGGTTCGGGGAAATGAACGCAAAGCAATGGTGGGAACACAACAGGGAGAGGATCCAAGCTCAATACCTATAA 1305 47.74 MWAQAVLRENQRVIVELENVLFLSVTAEIKREYALFGDILGILIAVVVGCHCLVAKNFLGSQTVCGGFQFYFRWIKASRVKKRQNDGGEDGAARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPPVNRHPHVRSESRFKGTFRGDQTPGGDSTISACDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEDGRDSSYSKMGRDSPMTSANKDWTPRNYKPSGSKGFPSDQHFDHGSSHPYAGSSAYPAGSTKGDMSSMEASRTTTSSRDEPSISISNASDIEAEWVEEDEPGVYITIRQLVDGTRELRRVRFSRERFGEMNAKQWWEHNRERIQAQYL 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1364837 1371317 - ClG42_10g0011200.10 Clacu10g0112 258736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0112 434 MobiDBLite consensus disorder prediction 276 372 - -
Clacu10g0112 434 PANTHER PROTEIN BREVIS RADIX-LIKE 1 82 434 IPR044532 -
Clacu10g0112 434 MobiDBLite consensus disorder prediction 296 320 - -
Clacu10g0112 434 Pfam Transcription factor BRX N-terminal domain 96 129 IPR027988 -
Clacu10g0112 434 Pfam Transcription factor regulating root and shoot growth via Pin3 378 433 IPR013591 -
Clacu10g0112 434 Pfam Transcription factor regulating root and shoot growth via Pin3 215 269 IPR013591 -
Clacu10g0112 434 MobiDBLite consensus disorder prediction 345 372 - -
Clacu10g0112 434 MobiDBLite consensus disorder prediction 84 104 - -
Clacu10g0112 434 ProSiteProfiles BRX domain profile. 215 270 IPR013591 -
Clacu10g0112 434 ProSiteProfiles BRX domain profile. 379 434 IPR013591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0112 Clacu-Chr10:1364837 Clacu11g0301 Clacu-Chr11:2730994 8.80E-50 dispersed
Clacu10g0112 Clacu-Chr10:1364837 Clacu09g0092 Clacu-Chr9:873593 1.30E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0112 - - - 0.0