Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0128 ATGATCGATCTGTTTCTAGTAGAGCCCACCTTCAATGACGAACAGGATGTTGGCTCTGCGAAGTTGAGAATTTCTCTGTTAAGTAAATTAGAATCTGTTTTATGGAAGTTGCTGACTTCTGGAGGACGTTCTGAGGTTCGATTATGGCTTTCTAATACCATAGCTAGTGTGACATCTATCAGTCCCCAGCATCAGCGGGACCTGTTTATGGCATTACTGAGACGGAAGCCATTGAAGAGGGCCTTCGCATCTCAATTACTGCAAATGTTGTTTGAAAAGAGATCACGAGAGGCAGGGATTCTCATTGCTAAGAGAAGCTACATAATGGAAAATTTTTTCGAAGGAAACCCACGACGAATATCTCAGTGGTTTTCCAATTTTGCCACGAATGGTGCATCAGATCATGGGAAAGGTGCCAAGGCCTTAGCACAGTTTGCTTTTGTAAATCGAGACATTTGCTGGGAGGAGCTTGAGTGGAAGGGGAAACATGGGCAGTCACCTGCAGTTGTTGCAACAAAGCCCCATTATTTTCTTGATCTGGATGTGCATCAAACTGTGAAGAATTTCATTGAGAACGTACCAGAGTTTTGGTCTTCCATTGAGTTTGCCGAGTCACTTAAAGATGGTGAAATTTTGTTTCTCGACACGAAATTCTTTGCGAAATATTTTGTCGATCTGATGCTTAAAGATGATCCAAAAGATGTTTGGGAAGTCATTGATGAGTTCCTAATGCATGAATCATTTTCTTCACTGTGTCAACGTCTCCTCGTTACTCTCGAAGAGGCTGATTTCTGCAACTTTCTAAAAATGCTATGTAAACTTCTTAGGCCTAGAATAGAAACCAAGGATTTTGGTAATTCGTCTTTTATGTTTGAAGTCATACTTTCCAAGTATGGCGACTCTGAATCTATTGATCAGATCTTACTATTAAATGCTGTCATTAATCAAGGACGCCAACTTCTACGCCTTTTACGTGATGAAGATGGGGAGGAACAATTGGATGAAATCAAGGCTATTGTCCACAAGATTTCAGTGATCTCAAGCAACACTCATAGTTTATTCCCACTATTGAAGGAGTGTGACGAGAGAAAAAAGACAATAGAGATGATAAAATGGCTAGGGCTTCAGTCTTGGGTTCTTCATTATAGAATGTCAGAGGAATGTCAGACTCCTGAGTTATGGGAATCCTTGTTTGTTGATAACGGCATAGGATTCCAAAAATCTAATGAATATTCGTTGTTGGATCACAGTTGCCTATCAGAAGATGATGGTTTGGAACCATGTAATAGAGCACAAGCTAAATCTAAGAAGCAAAAAAAGGGGAGAAAAGGTAGAAAAAGAAGAAAAAGGAACTTTGACAACGAGGATAGCTGTGATGATGAGCTGCTGGACTTTGATATTAAGAATGATAGGATGGACTTGAAGTTAAACACTGGAAGTTGGTTGCTTTCCACTGATGAATATGCTGTAACATGGAATGCTAAGGATCTACCAGAACACCTATCAAAGCACTCAATGGAAGGAGACCGGATTCTACCTTCTGAAACCGTGATGGCTACCAACAAGATTACTGTTACCAACACATACAAGCTCGATCAGATGTATTGGCGGCAAAAGTTGATCAGGTACTCCCTCCGCCGCCGTTGCCGCTCTGTGGATATGAGCGGAGAAGCTGAGCAGAAACTGGAGGCTCGGCGTCTCAGAGAATTGGCAGAGAAGAAGTTCAGAGATTCCAATCTCAAGTCTGCTCTCAAGTACGCCAAGCGAGCCCACCGCCGCGATCCAAACCTTGACGGCGCCGCCGAAATCCTCACTTCCTTACAGATTCTCCGAGTCGCCGCCGACTCTCCGGATGACTGGTACCGGATTCTTCAGGTGGAGCCTTTCGCTCACATTAACACAATAAAAAAACAGTACAAGAAGCTCGCTCTGCTTCTGCATCCGGATAAGAATCCCTATTTCGGCTCCGAGGAGGCGTTCAAGCTCGTCGGGGAGGCGTTTCACTTTTTTTCCGATAAGGTCAGGAGGAAGGAGTACGATTTGAAGCTCCGGATTCGGATTCAGGACGAGAAGATTGGAGATGCGGATGTGGAGAGCGAGACGTTTTGGACTGCTTGCTCGACGTGCCGGCTTTTGCACCAGTTCGAAAAGAGGTACGTAGGGCATAATTTAGTCTGCCCTAATTGTAGGAAAAGTTTTAAGGCCGTTGAAGTTGTGTATGATGAACCTGAGATTAGGGAAATTGGGGTCATGGTTAGGGGTCGAAGGTTGAGGAATTTGAGTTCTAGGCAAAATTCTGGTAGTTTCAAGGGATTAAAAGAATCTGTGAATACTAATCAATTGAAGAGAAATACTACAGTGAGTAAGACGAATGGTGAGAAGAAGAAAGGTCTGGAGTTAAATGGAAAAGCTGGTTCTATAGAAGGTGAAGTTAGAAATGGCAATTTAGAGGGAGTTGATAATGATGATGAGATATGTATAAGAAGATTAAGAAGTGGGAGTTTGAGGAAGAAGATGAGTAGTGTTGGTGAGGTTTTAGAGAGGTCTAAGCTGAAGCCTGTTAAAATGGAAGAGGAAATGATGACTTTGGCTGAATTACAGTCTCAAGTGATTCAGAAAGCACGAAAAGAGAAGATGAAGCTGAAGTTAAAGGAGGAGGAGGAAGCAGAGGAAAGAGAGAATAAGAGAAAGAAAGGGGTTGAGGAGAATGACGATGACGACGAGAGACTAACTTTGAAAGAGATGGAAGGTCTACTACGGATTCGTAGGCAAGGAGCATCAAAGCGTCCCGGGTTTTTGGAGAATGCACAGCAAAAGAATTCCAAGAAGAATGTGAATCTGGAAACTCAGAAGCAAGAAGCTTCATGTAATGGTGTTGATTTGGATATGATGGTGGTGGAAGATTCAGATTTTTATGATTTTGACAAGGACAGAATGGAGAGAAGTTTCAAAAAGGGGCAAGTGTGGGCTATATATGATGATGATGATGGAATGCCTAGGCATTATGGTTTGATTGAAGAAGTTACTGTAAATCCTTTTGAAGTGAAAATGAGTTGGTTGGATGTTCAAAACAATGGAGATGAAAGACTACTTTGTTGGGAGAAGATGGGATTTCATGTATCTTGTGGTAGATTTAAGGTCACTAAAAAAACAACCATTCATTCATTGAACATTTTTTCTCATGTTGTGGATTGTGAAAGAGCAGCAAAGGAAGTCTATAGGATTTATCCCAAAAAGGGATCAGTATGGGCACTTTACAAAGAAGAAGGAGAAGGTTTGGATGCTGAGAAGAGAAGAAACCTTTTGAGCAAAGGGAAACGAACTTACGATATCGCAGTGTTTTTAACAACGTACAGTGAGATGCATGGTTTAAGCATGGCTTATCTTGAGAAGGTTGATGGTTACAAGACCATATTCAAGAGAAAAGAGATCGGTTATCATGCTATTAGATGGTTCGAAAAGGACAATATCCAATTATTTTCGCATCAAATTCCTGCACGGAAGCTTTCTATAGATGAGGCTCTTGGGCATCTGAAGGACTGTTGGGAACTTGATCCAGCTTCTCTTCCTTCGGATTTGCTAACCACCTATTGGAACAAATAG 3603 41.83 MIDLFLVEPTFNDEQDVGSAKLRISLLSKLESVLWKLLTSGGRSEVRLWLSNTIASVTSISPQHQRDLFMALLRRKPLKRAFASQLLQMLFEKRSREAGILIAKRSYIMENFFEGNPRRISQWFSNFATNGASDHGKGAKALAQFAFVNRDICWEELEWKGKHGQSPAVVATKPHYFLDLDVHQTVKNFIENVPEFWSSIEFAESLKDGEILFLDTKFFAKYFVDLMLKDDPKDVWEVIDEFLMHESFSSLCQRLLVTLEEADFCNFLKMLCKLLRPRIETKDFGNSSFMFEVILSKYGDSESIDQILLLNAVINQGRQLLRLLRDEDGEEQLDEIKAIVHKISVISSNTHSLFPLLKECDERKKTIEMIKWLGLQSWVLHYRMSEECQTPELWESLFVDNGIGFQKSNEYSLLDHSCLSEDDGLEPCNRAQAKSKKQKKGRKGRKRRKRNFDNEDSCDDELLDFDIKNDRMDLKLNTGSWLLSTDEYAVTWNAKDLPEHLSKHSMEGDRILPSETVMATNKITVTNTYKLDQMYWRQKLIRYSLRRRCRSVDMSGEAEQKLEARRLRELAEKKFRDSNLKSALKYAKRAHRRDPNLDGAAEILTSLQILRVAADSPDDWYRILQVEPFAHINTIKKQYKKLALLLHPDKNPYFGSEEAFKLVGEAFHFFSDKVRRKEYDLKLRIRIQDEKIGDADVESETFWTACSTCRLLHQFEKRYVGHNLVCPNCRKSFKAVEVVYDEPEIREIGVMVRGRRLRNLSSRQNSGSFKGLKESVNTNQLKRNTTVSKTNGEKKKGLELNGKAGSIEGEVRNGNLEGVDNDDEICIRRLRSGSLRKKMSSVGEVLERSKLKPVKMEEEMMTLAELQSQVIQKARKEKMKLKLKEEEEAEERENKRKKGVEENDDDDERLTLKEMEGLLRIRRQGASKRPGFLENAQQKNSKKNVNLETQKQEASCNGVDLDMMVVEDSDFYDFDKDRMERSFKKGQVWAIYDDDDGMPRHYGLIEEVTVNPFEVKMSWLDVQNNGDERLLCWEKMGFHVSCGRFKVTKKTTIHSLNIFSHVVDCERAAKEVYRIYPKKGSVWALYKEEGEGLDAEKRRNLLSKGKRTYDIAVFLTTYSEMHGLSMAYLEKVDGYKTIFKRKEIGYHAIRWFEKDNIQLFSHQIPARKLSIDEALGHLKDCWELDPASLPSDLLTTYWNK 1200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1524795 1532448 - ClG42_10g0012800.10 Clacu10g0128 258752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0128 1200 Pfam DnaJ domain 619 680 IPR001623 -
Clacu10g0128 1200 MobiDBLite consensus disorder prediction 929 951 - -
Clacu10g0128 1200 Pfam Domain of unknown function (DUF3444) 963 1170 IPR024593 -
Clacu10g0128 1200 CDD DnaJ 619 672 IPR001623 -
Clacu10g0128 1200 SUPERFAMILY Chaperone J-domain 608 684 IPR036869 -
Clacu10g0128 1200 PRINTS DnaJ domain signature 655 675 IPR001623 -
Clacu10g0128 1200 PRINTS DnaJ domain signature 621 639 IPR001623 -
Clacu10g0128 1200 PRINTS DnaJ domain signature 639 654 IPR001623 -
Clacu10g0128 1200 MobiDBLite consensus disorder prediction 882 911 - -
Clacu10g0128 1200 Gene3D DnaJ domain 608 705 IPR036869 -
Clacu10g0128 1200 MobiDBLite consensus disorder prediction 931 951 - -
Clacu10g0128 1200 Coils Coil 933 953 - -
Clacu10g0128 1200 SMART dnaj_3 618 675 IPR001623 -
Clacu10g0128 1200 ProSiteProfiles dnaJ domain profile. 619 683 IPR001623 -
Clacu10g0128 1200 MobiDBLite consensus disorder prediction 430 451 - -
Clacu10g0128 1200 PANTHER OS01G0897100 PROTEIN 1 506 - -
Clacu10g0128 1200 Coils Coil 871 903 - -
Clacu10g0128 1200 MobiDBLite consensus disorder prediction 434 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0128 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1530 Clacu-Chr7:29918412 Clacu10g0128 Clacu-Chr10:1524795 1.50E-58 dispersed
Clacu09g1673 Clacu-Chr9:29798917 Clacu10g0128 Clacu-Chr10:1524795 9.40E-12 dispersed
Clacu10g0128 Clacu-Chr10:1524795 Clacu06g0420 Clacu-Chr6:5007161 3.90E-07 dispersed
Clacu10g0128 Clacu-Chr10:1524795 Clacu11g1639 Clacu-Chr11:27545497 2.40E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g749 . . . . . . . . Cmo06g00627 . . . . . . . . . . . . . . . Cla10g00123 Cam10g0123 Cec10g0132 Cco10g0132 Clacu10g0128 Cmu10g0975 Cre10g0385 Cone8ag0498 Cone12ag0497 . . Lsi07g01156 . Chy04g00132 . . . Bda07g00072 Bda09g00760 Bpe08g00803 Bpe11g00312 . . Sed02g0043 . Cmo19g00227 Cma06g00619 . Car06g00553 . . Cpe15g00185 Bhi05g00433 Tan07g2028 Cmetu04g1055 Lac11g2456 Hepe06g0983 . Lcy12g1980 Cla09g01084 Cam09g1138 Cec09g1145 Cco09g1163 . . Cre09g1101 . Csa03g04572 . Cme04g00155
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004105 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 1 1 5 6 0 42