Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0129 ATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAAGGAGACGAAGACCCCGCCTCCTACTACTACCACACAGGAGCAGACTACAACCACAAGCGCTGGCACAGTTAATCCTGATTGGTCGGGTTTTCAGGCATATTCTCCTATTCCTCCACATGGTTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCACCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATATGCTCACCCTTCCATTCCCCCGGGATCATATCCTTTTAGCCCCTTTACAATGCCTTCTCCGAATGGAATCACCGAGGCCTCTGGTAATACAGCAGGAAGTTTGGAGGGAGACGTTAAACCACCCGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACCGGGAAGAACAATGAGCTGGGTAAAGCATCTGGAACATCTGCCAATGGAGCATACTCTAAGAGTGCTGAGAGTGCCAGCGAAGGTACAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCCAGACACTTTGGAAGTTGAAGTATCTCAGAATGGTAACTCAATGCATGGTACTCAAAATGGAGGATCTAATACTCAGGCTATGGCTGCCATCCCATTGGCAACTGCTGGGGCCTCAGGAGTCGTTCCTGGTCCCACGACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCCACTATCCCTGCTATCCGTGGAAAGGTTCAATCGACTCCAGTTGCTGGAGGACTAGTTACCGCTGGATCTCGGGATAGCATACAGTCACAGCTTTGGCTGCAGGATGAGAGAGAGATTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGACGATCCCGGTTACGCAAGCAGGCAGAATGTGACGAATTAGCACATCGAGCTGAAGCTTTACAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGACTATGAACAGCTACTTTCAGAGAATGCTTCTCTGAAGGAAAGACTCGGGGAAGTTCCGGGAAACGAAGAAGTAAGGGCCGGCAGGAAAGGCCAGCGTTTAAGTAACGAAACCACACAACCTACAGAGTCAGAGGTTGTGCAAGTTGGTAACAAGAATTGA 1218 47.62 MSGSEMEKPPKDKETKTPPPTTTTQEQTTTTSAGTVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFTMPSPNGITEASGNTAGSLEGDVKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKASGTSANGAYSKSAESASEGTSEGSDANSQNESQPKLGSRPDTLEVEVSQNGNSMHGTQNGGSNTQAMAAIPLATAGASGVVPGPTTNLNIGMDYWGASSTIPAIRGKVQSTPVAGGLVTAGSRDSIQSQLWLQDEREIKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSDYEQLLSENASLKERLGEVPGNEEVRAGRKGQRLSNETTQPTESEVVQVGNKN 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1536087 1540951 + ClG42_10g0012900.10 Clacu10g0129 258753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0129 405 MobiDBLite consensus disorder prediction 302 324 - -
Clacu10g0129 405 MobiDBLite consensus disorder prediction 369 383 - -
Clacu10g0129 405 Pfam G-box binding protein MFMR 4 98 IPR012900 -
Clacu10g0129 405 CDD bZIP_plant_GBF1 304 354 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0129 405 MobiDBLite consensus disorder prediction 17 42 - -
Clacu10g0129 405 MobiDBLite consensus disorder prediction 363 405 - -
Clacu10g0129 405 MobiDBLite consensus disorder prediction 120 205 - -
Clacu10g0129 405 SUPERFAMILY Leucine zipper domain 302 358 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0129 405 MobiDBLite consensus disorder prediction 384 405 - -
Clacu10g0129 405 MobiDBLite consensus disorder prediction 1 44 - -
Clacu10g0129 405 MobiDBLite consensus disorder prediction 148 205 - -
Clacu10g0129 405 MobiDBLite consensus disorder prediction 1 15 - -
Clacu10g0129 405 Coils Coil 319 367 - -
Clacu10g0129 405 PANTHER G-BOX-BINDING FACTOR 3-RELATED 23 392 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0043565(InterPro)
Clacu10g0129 405 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 306 321 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0129 405 SMART brlzneu 299 363 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0129 405 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 301 364 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0129 405 Pfam bZIP transcription factor 299 361 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0129 405 Gene3D - 302 356 - -
Clacu10g0129 405 Pfam Disordered region downstream of MFMR 137 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0125 Clacu-Chr5:1267517 Clacu10g0129 Clacu-Chr10:1536087 4.00E-23 dispersed
Clacu10g0129 Clacu-Chr10:1536087 Clacu09g1161 Clacu-Chr9:11144387 8.30E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48423 PF16596 MFMR_assoc 5.90E-48 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0129 K09060 - csv:101206627 711.835